PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0027.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 410aa    MW: 44400.9 Da    PI: 4.9112
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18328362135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C+t kTp+WR gp g+ktLCnaCG++y++ +l
  Sphfalx0011s0027.1.p 328 CTHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL 362
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-17322376IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438326358IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15326385No hitNo description
CDDcd002022.47E-14327374No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14327360IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440328353IPR000679Zinc finger, GATA-type
PfamPF003202.7E-16328362IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDSAAALLLP AAAIDGSLRK QQQKPLPDVA AVVGGSSFVD VFQIDDLLDF SNEDIAGPIG  60
EADLVTATSS FSSAVPSVAK STETIGGCLA PRLPEKGTEQ QHHSIKPQVD SEAAEIEEES  120
LCIPYDDLEE LEWASRFLEY SFPVTASFDS AAPTKGTTWS DDGSSVISME ENLETCDMQY  180
SASKKHGYHK AASPVSVLEQ HTTTSAATTL SEVTGGSDEH SLDFCVPGRA RSKRSRSGGK  240
KWTSGGILSS TTTSCGGSKR KSAATAPIEW SAGEDEEDEE EDDDEEEDAV EEGEEWQSGN  300
FHKTKQSTKW PSRRRRQDGG GGGDVLRCTH CQTQKTPQWR TGPLGPKTLC NACGVRYKSG  360
RLLPEYRPAS SPAYVPHKHS NSHKKILEMR RQREMTMPQH QQFKASSLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-37GATA transcription factor 9