PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0201.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 610aa    MW: 66766 Da    PI: 6.4348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0201.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+l  +v+  G+g+W+++ ++ g+ R++k+c++rw +yl
  Sphfalx0010s0201.3.p 14 KGAWTAEEDEKLRLYVEINGTGHWRSVGKKAGLQRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding51.81.9e-1668110246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+++  E++l+v++++ +G++ W++Ia++m+ gRt++++k++w++
  Sphfalx0010s0201.3.p  68 GSFSSAEEDLIVKLHASHGSR-WSLIAAKMP-GRTDNDIKNHWNT 110
                           789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.058961IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-211064IPR009057Homeodomain-like
SuperFamilySSF466891.25E-2812108IPR009057Homeodomain-like
SMARTSM007179.2E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001671.48E-101661No hitNo description
PROSITE profilePS5129425.86962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1468110IPR001005SANT/Myb domain
CDDcd001674.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MTRLSKPDVE DVRKGAWTAE EDEKLRLYVE INGTGHWRSV GKKAGLQRCG KSCRLRWTNY  60
LRPDIRHGSF SSAEEDLIVK LHASHGSRWS LIAAKMPGRT DNDIKNHWNT RLKKKLCDMG  120
IDPVTHKPIA ELLRDLAGTM VQSSGCNEVA EQAAKRCFSD SLLNKAVWEC TRPSGISPMS  180
EITTVNLTQK EEEEEYEAPG RQDDDAFNTG AGSNAIRECR VEEHESNNSG SSNSMAESSC  240
SQEAFSRGSD QQHQGGRKKT NLRKVSPPCS QITYDMSSAP AVGLRVQELR RRLADSSDAS  300
PAAAATVNLN FHARTSTPHD LNQVAPMNLE KSSSPIDMPF TYSSNNSNEL ENMLHLLRSS  360
TRVLQHLEHL EGVGNNIAPE EFRAAAAAAA PTMLTTTPVS VMQSTDDDYT KWLATRNHGG  420
ISQQALHVSG TQNIRPYNFT HPRFNTQLNL HKNQPIMGQA QGMNMGQDQD SEIGNQASTA  480
DAAVVLRSEQ IIPQHPMQNP TGADPPLQQT ATDHHESESF NSSVTPAFSF SGLLTPTPNS  540
AAASSQLMSS LYVDPVSSSS MTGVSFANFS GPLFNFSGPL AQTHTGGKLQ DYVDLSSPRM  600
VQLWDYHDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2491162108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390138.11e-102transcription factor MYB94-like
TrEMBLA0A2K1JR421e-101A0A2K1JR42_PHYPA; Uncharacterized protein
STRINGPP1S46_302V6.11e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.15e-60myb domain protein 103