PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0232.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 374aa    MW: 41780.4 Da    PI: 6.8292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-12227252126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           y   +C+++ +tG+C yGd+CkF+H+
  Sphfalx0009s0232.1.p 227 YQPDICKDYKETGYCGYGDSCKFMHD 252
                           66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9224257IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878226254IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10227252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12227257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.4E-14290347IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.52E-13294349No hitNo description
PfamPF139206.8E-8304347No hitNo description
SMARTSM001849.9E-4305342IPR001841Zinc finger, RING-type
CDDcd001625.75E-8305346No hitNo description
PROSITE profilePS5008910.394305343IPR001841Zinc finger, RING-type
PROSITE patternPS005180320329IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MCARAFRSAS VQFFCVCGSD SGVRKKAAME DAEVQAEGAS SAPALASTQG VSFFKKPARN  60
KNMRKRATSE EEAEEEETGS AVLRKEKAQK KTDGRLEFTS GAVATSSKQE ANQEVKPDKG  120
KPSTFFFESS REVQTENDSR ATATSEIETE FDRDARAIRE RVLKQASEAI KGGKSSADSK  180
LYKGINGYTD HKAGFRQEHT ISREKAGGAH GPLRASAHIR MSVRFDYQPD ICKDYKETGY  240
CGYGDSCKFM HDRGDYKSGW QMEREWDEAE KRRKERIVQG VADDNEVAGE ANEEDEEDDE  300
LPFACFICRQ PFTDPVVTSC KHYFCEHCAL KHHARNKHCF VCNKPTNGVF NTAQDIVRKM  360
KELKEAEAKE STT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-70423606317RING finger protein 113A
5z58_M8e-70423606317RING finger protein 113A
6ff4_t8e-70423606317RING finger protein 113A
6ff7_t8e-70423606317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382662.11e-165zinc finger CCCH domain-containing protein 15-like
SwissprotQ8GX841e-137C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA9SSR11e-163A9SSR1_PHYPA; Predicted protein
STRINGPP1S114_84V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-135C3H family protein