PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0008.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 783aa    MW: 82838.9 Da    PI: 7.9227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0008.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.5e-13482577295
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           +k+lt  dv+++gr++lpkk ae+   +++ +e++ l++ed  s+r W++++++  ++ks++y+l+    eF k  +Lke+D+++++  
  Sphfalx0008s0008.2.p 482 QKELTLTDVGELGRIILPKKDAESQlpQLDAKEGQFLQMEDyNSNRHWSLRYKWwpNNKSRMYLLE-SAGEFIKFYELKEKDMLILY-- 567
                           6889999****************99**888888999*****8888*********877777777777.99******************.. PP

                           SSSEE..EEE CS
                    B3  86 grsefelvvk 95 
                           ++ e++lv++
  Sphfalx0008s0008.2.p 568 KDAEGKLVIR 577
                           5667767765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-20476576IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-14481574IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-6481582IPR003340B3 DNA binding domain
PfamPF023624.2E-9482577IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MDVVDGKIVS AAENKRGFWV GTKRTSDSVV TEGSASSFRA AGAGSTISGE KIPFLVEQMT  60
KITTISSPPP LPVLSDDSFI DVREWLGQIN SRSSNESPAG CTLATSSCEP GLTAVRSPGN  120
AQVPSDAPHL RQHPAAAGYA GGAPSPPFLK RQKSGRLSRE PGWMPDEPLS PRKAGAAGKT  180
TAALAIVKRE PVTSENCTNR MNGIYDEGPC SPLQQKKSMM PGPSPHPRPE QLLASCCKTS  240
EPTVSSASLP ADFAAKTLTR CTTSRATAAS PGIANEPSMM RYRTTTISTA PAATITTPPT  300
IQPSSVFDAA PCSFIGSSSC MTHVIPGGGS SSDFGCVAAA RHRRSSSAAA AMTSCCYGGS  360
AADHAVSQQL PVKRSLLQSQ DHLAENSSAC STRSVSMHSD HTGTTRFRHM HSAAAGARAA  420
PLSCSSTGMA WSSPPAESGP IVVDTPLVSW ASYSQAANSV FSTKPPASQS RSWAEPLRIL  480
LQKELTLTDV GELGRIILPK KDAESQLPQL DAKEGQFLQM EDYNSNRHWS LRYKWWPNNK  540
SRMYLLESAG EFIKFYELKE KDMLILYKDA EGKLVIRGQK ATPSFLQNDS SGDPTASSCS  600
KNTGRRSIKG VCSRGAASTC SPRIASPSSA MPRQWGRRGC TEPVSALDSE AKKGSLRVKL  660
ENSSSSAEGN TSKDTGSPPN STGSGSSTGE GDFVSPPTSL NPTNVTHLDT KPLNCDLMLA  720
PGVQVCPNAF AEVVNDLDVE TENASLGYML QLDTGFDWGK LPDPPALELP SFKFEETWGD  780
SM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-284775749106B3 domain-containing transcription factor LEC2
6j9c_D2e-284775749106B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-34B3 family protein