PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0189.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 510aa    MW: 57399.2 Da    PI: 7.1283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0189.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10450505248
                           SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                           ++WTteE++ l+++vk++  g     +Wk+I +  +     +Rt  ++k++w+++l
  Sphfalx0007s0189.2.p 450 LPWTTEEEDVLKEGVKRFSVGgnsgfQWKSILEFGNgkfdPTRTTVDLKDKWRNLL 505
                           79****************99999**********999******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.7E-12281339IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.67E-12283341IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.956286335IPR019787Zinc finger, PHD-finger
SMARTSM002497.5E-5288333IPR001965Zinc finger, PHD-type
PROSITE profilePS500907.875444505IPR017877Myb-like domain
SuperFamilySSF466897.48E-11446506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-10446506IPR009057Homeodomain-like
SMARTSM007177.3E-6448507IPR001005SANT/Myb domain
CDDcd116603.44E-15451506No hitNo description
PfamPF002491.0E-7451505IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MGVASMKSGG APLLETTRGM AWKWILEKVV HCPDFGTTFL KELILHVPDL EDPLCQPLLE  60
RVAVRYLEEA VVSNQINGAV IPLIQTLTGC PRSQIPRASS VKERFNRELV LRVKTEARNQ  120
SKETLEKYFR KYSLEKLEED LHNFVDDKKQ SFQTPFLDQL VQEFLENKLP SMSVQDLSQG  180
HVLSYRKDNS LFGGATHRFQ GLEKTGGTLE SLELEKEPEK PSIVRMHQHG KVDTNEELQR  240
QKTGEAQLLQ QAGKAPGDLD KSQSQLSEKK ESVVLMPSEI ASDGHEECCH KCKEGGKLFY  300
CDGCPIAMHG GCLELLGLHL PELQDDWFCP VCTEKTAKDL VSLAEQVAAE AKGKLQLFIR  360
ESSKKHCESE GSKLQRLKLD NPGIDNVRPQ LSIEEQRVAS QGALKVSNQN TNTTNNGRKR  420
QSVAMDENFD YKEDNSSGRH RIRGVRRKTL PWTTEEEDVL KEGVKRFSVG GNSGFQWKSI  480
LEFGNGKFDP TRTTVDLKDK WRNLLKGLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380572.16e-38uncharacterized protein LOC112284704 isoform X1
TrEMBLA9RCZ81e-36A9RCZ8_PHYPA; Predicted protein
STRINGPP1S2_311V6.12e-37(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-07MYB_related family protein