PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0189.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 555aa    MW: 62483 Da    PI: 6.8677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10495550248
                           SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                           ++WTteE++ l+++vk++  g     +Wk+I +  +     +Rt  ++k++w+++l
  Sphfalx0007s0189.1.p 495 LPWTTEEEDVLKEGVKRFSVGgnsgfQWKSILEFGNgkfdPTRTTVDLKDKWRNLL 550
                           79****************99999**********999******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.2E-12326384IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.1E-12328386IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.956331380IPR019787Zinc finger, PHD-finger
SMARTSM002497.5E-5333378IPR001965Zinc finger, PHD-type
PROSITE profilePS500907.875489550IPR017877Myb-like domain
SuperFamilySSF466898.22E-11491551IPR009057Homeodomain-like
SMARTSM007177.3E-6493552IPR001005SANT/Myb domain
PfamPF002491.2E-7496550IPR001005SANT/Myb domain
CDDcd116604.00E-15496551No hitNo description
Gene3DG3DSA:1.10.10.603.0E-10496551IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGVASMKSGG APLLETTRGM AWKWILEKVV HCPDFGTTFL KELILHVPDL EDPLCQPLLE  60
RVAVRYLEEA VVSNQINGAV IPLIQTLTGC PRSQIPRASS VKERFNRELV LRVKTEAVLS  120
FLRGGEKDWA GFSQALHQVF PEEANDLQTR DCQRELALLL KARNQSKETL EKYFRKYSLE  180
KLEEDLHNFV DDKKQSFQTP FLDQLVQEFL ENKLPSMSVQ DLSQGHVLSY RKDNSLFGGA  240
THRFQGLEKT GGTLESLELE KEPEKPSIVR MHQHGKVDTN EELQRQKTGE AQLLQQAGKA  300
PGDLDKSQSQ LSEKKESVVL MPSEIASDGH EECCHKCKEG GKLFYCDGCP IAMHGGCLEL  360
LGLHLPELQD DWFCPVCTEK TAKDLVSLAE QVAAEAKGKL QLFIRESSKK HCESEGSKLQ  420
RLKLDNPGID NVRPQLSIEE QRVASQGALK VSNQNTNTTN NGRKRQSVAM DENFDYKEDN  480
SSGRHRIRGV RRKTLPWTTE EEDVLKEGVK RFSVGGNSGF QWKSILEFGN GKFDPTRTTV  540
DLKDKWRNLL KGLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380573.13e-57uncharacterized protein LOC112284704 isoform X2
TrEMBLA9RCZ81e-55A9RCZ8_PHYPA; Predicted protein
STRINGPP1S2_311V6.12e-56(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-07MYB_related family protein