PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0093.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 820aa MW: 83205.7 Da PI: 9.9193

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0093.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	214	256	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 WT+eEd+ l+ av++ G g+W+tI ++ Rt+ q+ rw Sphfalx0007s0093.1.p 214 LWTPEEDLELIAAVEKCGEGNWATILKCGFnHERTASQLSQRW 256 5*************************98556778888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-14	205	259	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.281	207	264	IPR017930	Myb domain
SuperFamily	SSF46689	6.32E-13	209	261	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-8	211	262	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-7	214	256	IPR001005	SANT/Myb domain
CDD	cd11660	1.28E-13	215	261	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MGRKSYFSES DVMPLVKRYT SSTLLTLLRE IAKCETAKLD WDALVKSSAT GISSAREYQA 60 LWRSLAYRVE LKQCFEEDEC PLDDESDLEF ELEPVPAVSM EVAGDVSMCV KADMQRHGIS 120 GISCKRKADP MWKSDVKEVE VAPTVVHQGS TLSGSSSGAG TVASNTSLKG IPTANNGALH 180 VASNKQFAVV PSASNDSALL SGALCQTDRK KRRLWTPEED LELIAAVEKC GEGNWATILK 240 CGFNHERTAS QLSQRWALIR KRREVAEKAG YRVGPGYSAS TPGSSGQAGA SPFVIPAVSS 300 PGSLEPALNG NTGSAIPGHA PSTSVPGGHV GSPAGVPMSA TQSPPVAQNV QGQGTGSVAV 360 YAMNSSAANT ITNTYSKANS SRPATGLGGT SSRLGHSLSG QSAAVGTLCV NGVSSATGLP 420 TVTGTGTGQA NSTGAVVAGS ATGASLHPSG AIGRNAPATH MISVGGGEMR NTSTLPLPTA 480 VMASATGKYV LSCNNVGASG ARGRLKGPHG PDPMVQAAAV AAGARIAPAS AAASLLMAAQ 540 SGNVVHIGPG GVPITKVGHS NQAGSAQHLN SVSSRGPSAI VHYIRTGAGV PPSAAPGMTM 600 TIQRTPSQHN TKIHSSRSLG NGQAALSAPK SNSSPVPVTS AQASRNNAHV QTGANHNSKS 660 NGPGRSGSRS HSSPPSPIVP AHEKSRTQPS NDSDSPASTL VRGAAYVVSS AAIARVSSAS 720 VVTTSESAQK EVHQASATSG RAAATSTSTP SPPIVIGGSN LVSLSLAEPA TKNGVMSSHV 780 ESQTKKDSNP SDTASPKHHA TDSDHNLVNN PQKPKAVRQ*

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MGRKSYFSES DVMPLVKRYT SSTLLTLLRE IAKCETAKLD WDALVKSSAT GISSAREYQA  60
LWRSLAYRVE LKQCFEEDEC PLDDESDLEF ELEPVPAVSM EVAGDVSMCV KADMQRHGIS  120
GISCKRKADP MWKSDVKEVE VAPTVVHQGS TLSGSSSGAG TVASNTSLKG IPTANNGALH  180
VASNKQFAVV PSASNDSALL SGALCQTDRK KRRLWTPEED LELIAAVEKC GEGNWATILK  240
CGFNHERTAS QLSQRWALIR KRREVAEKAG YRVGPGYSAS TPGSSGQAGA SPFVIPAVSS  300
PGSLEPALNG NTGSAIPGHA PSTSVPGGHV GSPAGVPMSA TQSPPVAQNV QGQGTGSVAV  360
YAMNSSAANT ITNTYSKANS SRPATGLGGT SSRLGHSLSG QSAAVGTLCV NGVSSATGLP  420
TVTGTGTGQA NSTGAVVAGS ATGASLHPSG AIGRNAPATH MISVGGGEMR NTSTLPLPTA  480
VMASATGKYV LSCNNVGASG ARGRLKGPHG PDPMVQAAAV AAGARIAPAS AAASLLMAAQ  540
SGNVVHIGPG GVPITKVGHS NQAGSAQHLN SVSSRGPSAI VHYIRTGAGV PPSAAPGMTM  600
TIQRTPSQHN TKIHSSRSLG NGQAALSAPK SNSSPVPVTS AQASRNNAHV QTGANHNSKS  660
NGPGRSGSRS HSSPPSPIVP AHEKSRTQPS NDSDSPASTL VRGAAYVVSS AAIARVSSAS  720
VVTTSESAQK EVHQASATSG RAAATSTSTP SPPIVIGGSN LVSLSLAEPA TKNGVMSSHV  780
ESQTKKDSNP SDTASPKHHA TDSDHNLVNN PQKPKAVRQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	6e-36	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0093.1.p