PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0042.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 602aa MW: 68907.6 Da PI: 8.8525

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0042.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	6.8e-12	377	418	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+W ++E l +++kq+G++ WktIa+++g R ++ck++w+ Sphfalx0007s0042.1.p 377 GKWKEDEVGVLMKLHKQHGNN-WKTIAEKVG--RYSYSCKDKWRE 418 79***************99.****8..********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-6	292	362	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.157	296	370	IPR017877	Myb-like domain
SMART	SM00717	0.0056	300	372	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.75E-10	350	418	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.389	371	424	IPR017930	Myb domain
SMART	SM00717	2.4E-5	375	422	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-10	376	419	IPR009057	Homeodomain-like
CDD	cd00167	8.73E-4	378	418	No hit	No description
Pfam	PF13921	9.0E-12	379	436	No hit	No description
SMART	SM00717	0.037	424	495	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.4	425	493	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	426	512	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.12E-7	472	551	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.133	495	548	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MAKKKKGMEL PEKGGTEKRT GVEVEKESIE RRCPDSENGS SQPSSLNLAE KRKKKDLKED 60 ELAEGQAGRT PASESSVFVH PRKFCEEKRR KKVSFSKLEH EASDIGNKCV EEVPSSKFKR 120 KIENGDGSEA LLVKEKRQKL NEASGHPSTG EPKKTTRKPQ LQQEGSPSEM SDRSRKSQET 180 SHDKGKKDPE AATTTRSPVK PRGELAVEKQ TSRNASLNEK LGDEKEGTHE GKNKENIMSR 240 ENASPQKPLQ TKKKVTIKLP EEELKHVAMS QEDPEDQEED VASDVELYNW KTQHLKANLV 300 HGKFTKKEDE ELKKAIFHYI REQGLDQNEG LAKVLNSSIH KDCRGCWQQV SKSLPHRSFR 360 SLYARAHRLL MPGTLLGKWK EDEVGVLMKL HKQHGNNWKT IAEKVGRYSY SCKDKWREAK 420 LKRAKGKWTL EEFEKLRMLV HTSLRVNAQL KKDPSDTRVD HRHLRDNVNW QFISDQMESR 480 THANCLTAWY NKVASSMVSS GDWAITDDAL LLQRIMEDCP VAEEWVEWDS LLEHRSGEVC 540 HKRWQEMGRT VGEQLKHSFI DQLEAVIKIF APELLDDEPN EADKKFKEDY DAFTSRQVSN 600 A*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MAKKKKGMEL PEKGGTEKRT GVEVEKESIE RRCPDSENGS SQPSSLNLAE KRKKKDLKED  60
ELAEGQAGRT PASESSVFVH PRKFCEEKRR KKVSFSKLEH EASDIGNKCV EEVPSSKFKR  120
KIENGDGSEA LLVKEKRQKL NEASGHPSTG EPKKTTRKPQ LQQEGSPSEM SDRSRKSQET  180
SHDKGKKDPE AATTTRSPVK PRGELAVEKQ TSRNASLNEK LGDEKEGTHE GKNKENIMSR  240
ENASPQKPLQ TKKKVTIKLP EEELKHVAMS QEDPEDQEED VASDVELYNW KTQHLKANLV  300
HGKFTKKEDE ELKKAIFHYI REQGLDQNEG LAKVLNSSIH KDCRGCWQQV SKSLPHRSFR  360
SLYARAHRLL MPGTLLGKWK EDEVGVLMKL HKQHGNNWKT IAEKVGRYSY SCKDKWREAK  420
LKRAKGKWTL EEFEKLRMLV HTSLRVNAQL KKDPSDTRVD HRHLRDNVNW QFISDQMESR  480
THANCLTAWY NKVASSMVSS GDWAITDDAL LLQRIMEDCP VAEEWVEWDS LLEHRSGEVC  540
HKRWQEMGRT VGEQLKHSFI DQLEAVIKIF APELLDDEPN EADKKFKEDY DAFTSRQVSN  600
A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	3e-59	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0042.1.p