PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0006s0293.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 383aa MW: 41365.6 Da PI: 7.0636

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0006s0293.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Sphfalx0006s0293.1.p 61 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 105 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	55	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	56	110	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.8E-18	59	108	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.4E-6	59	111	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-11	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-11	61	105	IPR001005	SANT/Myb domain
CDD	cd00167	2.77E-8	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MKCCNQQLLF PSFFDSSSSS SLLPPGGIAM ASSVVEQQQQ LLSEEAGCKK IRKPYTITKS 60 RESWTEQEHD KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTGERVPP 120 PRPKRKSAQP YPQKAPKNGI MPEVGEIGGF SLAGGLHSSS SLSGSSPAGW SQHMLARNHV 180 AQDSCIRATP DFSEVYKFIG SVFDPGVSGH LRTLKEMSPI DRETVLLLMR NLSINLSSPD 240 FKEDGTVDDD KSVSAQAGTP VPLTPVLSPR SVESDHSQQR ASILQPYTDS ATGSIQPLQL 300 HSYDGGGPIS PTFTGHGVSS SSPQGLEPAS LVLSPSVAMQ MHTEAMARLD QKPNTVVYVL 360 GSPNLTTGVV EEGAAGVDTW WT*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MKCCNQQLLF PSFFDSSSSS SLLPPGGIAM ASSVVEQQQQ LLSEEAGCKK IRKPYTITKS  60
RESWTEQEHD KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTGERVPP  120
PRPKRKSAQP YPQKAPKNGI MPEVGEIGGF SLAGGLHSSS SLSGSSPAGW SQHMLARNHV  180
AQDSCIRATP DFSEVYKFIG SVFDPGVSGH LRTLKEMSPI DRETVLLLMR NLSINLSSPD  240
FKEDGTVDDD KSVSAQAGTP VPLTPVLSPR SVESDHSQQR ASILQPYTDS ATGSIQPLQL  300
HSYDGGGPIS PTFTGHGVSS SSPQGLEPAS LVLSPSVAMQ MHTEAMARLD QKPNTVVYVL  360
GSPNLTTGVV EEGAAGVDTW WT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00625	PBM	Transfer from PK02532.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389914.1	1e-132	protein REVEILLE 3-like isoform X8
Swissprot	Q8H0W3	7e-80	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2K1JRD7	1e-138	A0A2K1JRD7_PHYPA; Uncharacterized protein
STRING	PP1S46_272V6.1	1e-132	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	4e-55	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0006s0293.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]