PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0006s0186.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 372aa MW: 39165.6 Da PI: 6.3516

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0006s0186.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	54	108	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sphfalx0006s0186.1.p 54 KQRLRWTPELHERFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 108 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.523	51	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-33	52	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-18	53	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	56	107	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-24	141	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MYQTTKFSAS SVMPERPKSQ VVEPWAPSPA GGPTYSAGSP GASGGGGAAG SAAKQRLRWT 60 PELHERFVDA VTQLGGPDRA TPKGVLRVMG VQGLTIYHVK SHLQKYRLAK YIPDSLSDGG 120 TSDKKKTSAD LFPSLDATSG IQITEALRMQ MEVQKRLHEQ LEVQRNLQLR IEAQGKYLQQ 180 IIEENQRRTA LSGTPVTTNV GEAGPSALEP HLGEATGQLE IKQLPVVVAT TQAPGSLVPT 240 QAPAGLNSHT PQSEFVGVSN LSNPGGAPSQ QLTDATHSED GAAGVKVFQL EGTEVSGTSQ 300 AVVEFDLPAQ GQEVVGSLQP NHSSLPPGTS FSPPPQAEDS HCPDAPSQEG YSKGKLQRFC 360 SAQTNDHANL V*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MYQTTKFSAS SVMPERPKSQ VVEPWAPSPA GGPTYSAGSP GASGGGGAAG SAAKQRLRWT  60
PELHERFVDA VTQLGGPDRA TPKGVLRVMG VQGLTIYHVK SHLQKYRLAK YIPDSLSDGG  120
TSDKKKTSAD LFPSLDATSG IQITEALRMQ MEVQKRLHEQ LEVQRNLQLR IEAQGKYLQQ  180
IIEENQRRTA LSGTPVTTNV GEAGPSALEP HLGEATGQLE IKQLPVVVAT TQAPGSLVPT  240
QAPAGLNSHT PQSEFVGVSN LSNPGGAPSQ QLTDATHSED GAAGVKVFQL EGTEVSGTSQ  300
AVVEFDLPAQ GQEVVGSLQP NHSSLPPGTS FSPPPQAEDS HCPDAPSQEG YSKGKLQRFC  360
SAQTNDHANL V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-25	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-25	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-25	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-25	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394212.1	6e-99	myb-related protein 2-like
TrEMBL	A0A2K1JK89	1e-97	A0A2K1JK89_PHYPA; Uncharacterized protein
STRING	PP1S269_36V6.1	2e-98	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0006s0186.1.p