PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0385.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 764aa    MW: 83446.8 Da    PI: 7.197
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0385.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.33.3e-31185269187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+Li++r+em++++r++ lk+plWe+v++k++e g++rs+k+Ckek+en++k+ykk+k+g+ +r  ++ +++++f++l+a
  Sphfalx0004s0385.1.p 185 RWPRQETLLLIKIRSEMDSNFRDSGLKGPLWEDVARKLSELGYNRSAKKCKEKFENIHKYYKKTKDGKAGR--QDGKNYRFFSELDA 269
                           8********************************************************************97..66678******985 PP
2trihelix95.35.7e-30563651187
              trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+  ev+aLi++r eme+++++  g++k+plWee+s+ m++ g+  r++k+Ckekwen+nk+ykk+ke+++kr +++s+tcpyf qle
  Sphfalx0004s0385.1.p 563 RWPTPEVHALIRLRIEMESKFQEtgGSSKGPLWEEISRGMSSLGYsFRNAKRCKEKWENVNKYYKKTKESNRKR-PDNSKTCPYFPQLE 650
                           8*********************96679******************558*************************8.9999*********8 PP

              trihelix  87 a 87 
                           a
  Sphfalx0004s0385.1.p 651 A 651
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-4182244IPR001005SANT/Myb domain
CDDcd122035.07E-31184249No hitNo description
PfamPF138376.5E-23184270No hitNo description
PROSITE profilePS500907.143184242IPR017877Myb-like domain
SMARTSM007170.11560625IPR001005SANT/Myb domain
CDDcd122038.93E-28562630No hitNo description
PfamPF138371.4E-21562652No hitNo description
PROSITE profilePS500906.446563623IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MQSAGQYHHG VNEVQQFVVG GGSSQQHPAA APHLFTLGAP HDLSSVSSPS GAGSGHAGSH  60
PAPGHHRSQH QQQQQLYAHH LTTHQPQAHA TSSHSSQQQR QHQQQVVQQQ LQQTVQHLDH  120
PAMVMQQSTV SAGTSADLQQ QPPQQLGHES LLMQGNLHDA AADDGFTEGE EGGFRSTPGS  180
AAGNRWPRQE TLLLIKIRSE MDSNFRDSGL KGPLWEDVAR KLSELGYNRS AKKCKEKFEN  240
IHKYYKKTKD GKAGRQDGKN YRFFSELDAL HSSRSSTHET AAAARLLQQL PAAAGSAGHG  300
ITHMLDDADA VTAAASPSAV FRAAAAAVKN VGSAGAAGFA AVSDSSEDSK HEEHAGRGES  360
EDDDTIRSCK KRKRKDQTSA ASTGAAAGRR TSSSNSSKKV MLLESLVKKL MDKQEAMQRK  420
FLESMERREQ DRIAREEAWK SQEMDRMIRE HELRTREHTL AASRDAALVA VLQKVTGQTL  480
QLPQLPPPPP PRGAPPPYLP ASVHTSIATT VEAPHIQVDQ HHHHRRRAQQ QQQQHEDVLL  540
QEVEAAVPDK DHHGSFSDPH SKRWPTPEVH ALIRLRIEME SKFQETGGSS KGPLWEEISR  600
GMSSLGYSFR NAKRCKEKWE NVNKYYKKTK ESNRKRPDNS KTCPYFPQLE ALYRNGGSRL  660
AAAAGGGTTT SYKQRMIMNK LVDEQDSEGL QPDHLQQDHI NLDDGDDDDD DDDDDSTGGQ  720
QQQLLQGSDV AAVNGAGAPV EGGSAATASN GAAAHSFSVF RES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369374KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-153trihelix transcription factor GTL1-like
TrEMBLA9RNY91e-156A9RNY9_PHYPA; Predicted protein (Fragment)
STRINGPP1S19_341V6.11e-152(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.29e-56Trihelix family protein