PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0336.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 778aa    MW: 84560.1 Da    PI: 6.9217
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0336.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15536622284
                           EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           +k+l psdv+++gr+vlpkk ae+h     +   e+  + +ed  +g+ W++++++  ++ks++y+l+ +  +Fvk + L+egD ++++
  Sphfalx0004s0336.1.p 536 QKELRPSDVSNLGRIVLPKKEAETHlpwvAMR--EGLSIGMEDfDTGKMWTFRYRFwpNNKSRMYLLE-NIGGFVKMHYLQEGDLLILY 621
                           7999***********************98655..4557*****9999*******99777777777777.******************99 PP

                           E CS
                    B3  84 l 84 
                           +
  Sphfalx0004s0336.1.p 622 R 622
                           3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-25527650IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-19534622IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.996535642IPR003340B3 DNA binding domain
SMARTSM010199.3E-8535642IPR003340B3 DNA binding domain
PfamPF023625.5E-12536622IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MPRECENGWD IYDHGPGIYR AANQQQQLAP QRELSIREPQ LSQPACSDLD CLLRDMREEG  60
LAKCYGTAAA AAASEPELPS GFNENMSIRS SSTDAAEVDE DLMAGAWLLH ESQPMSVDMM  120
AIPPCVASAA LQQARNCNGL SATVLSRRSS SMYEELNSIS SEKKQQRCKS CTESPSATSG  180
STSSIRSADV CCCMSHNNTN TCSRSSSSGH ESTAAAAAAA AAESFNRYMQ DQQGLESSTV  240
TSGISLDTNM RAMLRKVMVN EGTLNQAIES CGGGTKGMKE LMRRIMFWVQ ETYVESPEAS  300
AIVQGLEKLC MIKTRTAGSM GTPYEIENRS CCSTSCSRAA DRLGKGLPPQ FHQDLLQYQQ  360
YYGWQQQRDD HRAAAPLAST PAAFRSFTFA DALDAAAVTN SLFAYTPAAA ALHVGSRVVT  420
TTKDAAAAAA STRAAHATAR AACKSRMARQ RGHNAGPMQL HPAAQHQATH NAMPGRSPPG  480
PAAVCSPRAG SSWPSVPAMP HGTAAKTRTP PADIPAVVKR QQQVPESTDT LFFLLQKELR  540
PSDVSNLGRI VLPKKEAETH LPWVAMREGL SIGMEDFDTG KMWTFRYRFW PNNKSRMYLL  600
ENIGGFVKMH YLQEGDLLIL YRNIQGNYVA RGKKNLHLTR NQANCAEQAA AKNSSATCLI  660
GNPIQEEAAE SPRKKGRVMP SGTSSTPDVQ SAHLRVEKAK DVNSEENWSI ELNKHVMENS  720
SLANGVKEVF HHLDQPLERL PSLTLTDMSI ADILFDIDTE PEATLDPDPK CSNEKQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-345336343105B3 domain-containing transcription factor FUS3
6j9b_D5e-345336343105B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-41B3 family protein