PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0398.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1130aa    MW: 122222 Da    PI: 7.9097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0398.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.2e-07523543425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           + C +f+r G C++G++C+F H
  Sphfalx0003s0398.1.p 523 PACLDFSR-GKCHRGSSCRFLH 543
                           6899****.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099053.79E-1278141IPR000061SWAP/Surp
SMARTSM006483.0E-787146IPR000061SWAP/Surp
PROSITE profilePS5012810.55289131IPR000061SWAP/Surp
PfamPF018052.5E-790139IPR000061SWAP/Surp
PROSITE profilePS5010313.216519546IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4523543IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MFWTGRDNLY GHMRSSPGNH PAAQPPFVGI QGGGGGANPG ANLAGHPHPG FPPSPSQQQQ  60
QLLAAAAADN LLSMDNPPAM PRDAEMLKNI HVLSSFVVKN GPDFEQLARR KQVGDPKFGF  120
LFGGDPDTDA AIGQRYYEWK KRALEAGLRV AAQASSGLLV SPVQPSAPPY AEKLTSDAAA  180
SPAGSDMDLE DDSTSPPPSA FENKVATFVQ PVEPKVFLGT EVKGQEEAAF VRGEGRDFRA  240
AAPGVKVPET GTGLKEDAPS ESRRRDTRRR TGFDRPCMEE ISPLRKPASP HQDALPRASE  300
KVPFQERKPS SVANGHHAAE VTIRASRWAP VEPSVIPEAP KPSVGDSSLQ KPEQSEAVQK  360
LETAPSADNL DLPETQKRSD GKGMRDAKNI RPGRSSLVLE QEPPTIDEFG RLKRPESSDS  420
EEEDAYYRKR RRRSPSWSHS RSRSPGENRW QRHSRSRSPP RRHQRSRSYS HSSRRHRSYS  480
PSPPQRDSRA GAKSSWGGDS KFQERGGGRR GGRGETGGGG APPACLDFSR GKCHRGSSCR  540
FLHADHNNTD GASSGDPGRG GGWYGSRGGG GGGRSSSGWA DESSRARQNW DSTTETEKEN  600
DTEKVLEDKG THKAQGSPAK NYGDDLNANL IKTETKETSD SKSVVVKPAS FTDPPPLARL  660
PTIAPIPLPR SSSNFPSNVV NPLVATLPPQ DPAISVSQAF SSIASAQPVA AFAMDVPEKN  720
YTANTSLMQL GFDGQLPTPS LLPGFMGLQH HHPSLHLQES YSAPVPQPPA YSQTAMHSHP  780
HPGGFPQMAI QHQLLPSSTP GSVWPMGYTV TQTMQNYGLR GTTASPAQQT NLQPFSQQQQ  840
HAGVSASQEP YDPLMVDTFE PELVGAREVE PKPDFGGPGD MNMVIMESVS PGLPSRHHHH  900
SMTTTSVNQG APDALVMESV SPTTLPSGTQ QQQHQQHSHS VLESSLPLPQ AATVVSSTYG  960
LFPSQPKDQG LWGLENGSSA ADGNWNWNSG LVTSERESER QPTGDINDNN TAGHPSQQPA  1020
EKHEKEGGQY RELGQDDQEG REKEGRGLTL VRAAVTEYVK DVLKPTWREG HMSKEAFKTI  1080
AKRAVDKVLG ALQPHQIPKT AEKVDTYMSC SRPKILKLVQ GYVDKYVKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427431RKRRR
2427433RKRRRRS
3510518GGRGETGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-21C3H family protein