PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0377.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 446aa MW: 49483.5 Da PI: 7.7506

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0377.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.3e-06	181	195	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C+y +rC++aHg Sphfalx0003s0377.1.p 181 NGGCPYAARCRYAHG 195 499***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.6E-11	168	199	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.028	170	197	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MLCRTLEDKP VVRWVKTVIW PPGRHYAHVE FNSESAANAI MDAYIEQTAE FCLNDAAFCM 60 FRHQKYLRPG AVYETTNHVV LNLNFTVQVN QEKKSTKNLS LGSQSSEQCL DALELDGEEG 120 DESLDESVQP VRIELKPDEM AAAVHALPAL IKGVNQDTEQ GNVGGWSNHL YKTRLSNKFN 180 NGGCPYAARC RYAHGVEELL RPAPPQMPHA QGRRSAVTPP LGSSSSTGLT TDFMGRQDTS 240 DTGDEYVDPK SVICVRGIAD GLTSFSFKGA MNELFERTLR TTGVLEFGKY AVRHSQFKDN 300 SKQALVTFLN VEAPTAILSV VKPLKIAGQS LVILPWSNIQ EQKLQPLPKV NAGQPGFQPT 360 STVRRMLVNL VLLPRLVCFR CHSYLPKVSQ TLADLPCQVA PYAIQALVLT MESGHHHHGH 420 QVLQFHLYTI FTRWRWVASI TLCLG*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MLCRTLEDKP VVRWVKTVIW PPGRHYAHVE FNSESAANAI MDAYIEQTAE FCLNDAAFCM  60
FRHQKYLRPG AVYETTNHVV LNLNFTVQVN QEKKSTKNLS LGSQSSEQCL DALELDGEEG  120
DESLDESVQP VRIELKPDEM AAAVHALPAL IKGVNQDTEQ GNVGGWSNHL YKTRLSNKFN  180
NGGCPYAARC RYAHGVEELL RPAPPQMPHA QGRRSAVTPP LGSSSSTGLT TDFMGRQDTS  240
DTGDEYVDPK SVICVRGIAD GLTSFSFKGA MNELFERTLR TTGVLEFGKY AVRHSQFKDN  300
SKQALVTFLN VEAPTAILSV VKPLKIAGQS LVILPWSNIQ EQKLQPLPKV NAGQPGFQPT  360
STVRRMLVNL VLLPRLVCFR CHSYLPKVSQ TLADLPCQVA PYAIQALVLT MESGHHHHGH  420
QVLQFHLYTI FTRWRWVASI TLCLG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	3e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0377.1.p