PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0362.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 1840aa MW: 198704 Da PI: 6.5093

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0362.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.6e-10	1384	1408	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f G C+yG+rC++aHg Sphfalx0003s0362.2.p 1384 YKTRLCNKFNN-GGCPYGARCRYAHG 1408 9********.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10440	1.8E-8	6	62	IPR018848	WIYLD domain
PROSITE profile	PS50102	10.565	939	1036	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	3.5E-5	1179	1254	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	4.53E-5	1186	1252	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF90229	2.98E-7	1381	1412	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-14	1382	1412	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.835	1383	1410	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-7	1383	1409	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-7	1384	1408	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0018024	Molecular Function	histone-lysine N-methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1840 aa Download sequence Send to blast
MKADYKERLK IVLQVLQPLQ FSKALIIRTV RNLLNVYGVE AGWSYIEEDE YKNVLNCIVA 60 ERNEKRGQKI SHAPTQTESA GETQHVHESN RRFGKTTGPT QAIHVSPAAE MSTENCAPSH 120 HEDPDSPDIH QHQRWLWSQK IGIPPLACFR ETSPVLGAEE PEVLLGSLGS PGNVTSDTEK 180 SHEDNVPSND KPNREVQDSW DADGSNFPKP SKGRCRIRKA GRSGALLEPR DEAAPAQELM 240 HVSPVSDFEV EGQNQQDLCQ DVSRSAEKLK NDKGGIGEAD WTPKNFFRKV VSDSNQAPIS 300 CQSQSCEQEG GVANDSHDDM DMRGKLGGQI KTRDPLDHRD LPTVKRIVGV KGKRPDQIFP 360 VKKVLNSESD DLAATPLPPK KARLGANAVD IQSCPPVVGG KVPKGSGCGL LSMDSEEKKM 420 VPGNKSSTKL QGVATKARGD QAEGDSLFGI PGVATALVIT RDGTATKEID VGRTTAFKLG 480 GKKGSSSFLQ RQKRSVTIAE DFSNRHISHV DTWSLEACLT RAPPLGSPPS GLRFNAKVSA 540 VTNCSSDHDQ LLVGQGANAG ELVIDPTYTV TKPDTHTVLP LNKVPQPSLS GEVSNHETAR 600 AAGSGIAGSS SNILPELDKY NMQLPSPLSV SELDEAPSPE LPPGFANQIS HKRDLVAAVA 660 LHQPGCAISN LQKLQEHKDF PERAIPGHVW GPVSQVRPTA PILLDNSCTA SAAPCTSGPL 720 QPQSPLLAQS SPIENPSGKL ASVLRPINTS VKSELTPPGP GFQIQSSIPP FMPPRLPPNQ 780 FPSVAGMVSP DLADSLPQRP LPPLPSGGTQ LKQECSFGPL HPPGPSNVFP PEASCLSSPR 840 PTSPHSNNGT QQSSSAIPSG WPSSVPSVPP SQLFPPGMEP VTSMTVTGTP LGSRLSSTAP 900 SPTSLISNSF PPPMGTNSAI PSVGHKGFDA RRDAREHAKS IFVGNIPVGL VNTILVIREA 960 LEAYFKPLEF VPAKSAEIQH ISLYERSTGS YAFAQFSSEV FARIVLDACQ VKSMPLQVNG 1020 VQLSVGRNLK AEMVPPMPRE RMFKGDRVLD PAKILYVGNL PEQWRSEQLL QKQFSEILGG 1080 SNPGADSNFL SEIYILPECV DVYLELSSDV VADALVYKCI KDSKLLESMG DSVFICRHPK 1140 FVPLFALASK STSCTLAIPN QNVEKPLPKD SKLAAEEELA SRWQSTLYVG NLPLTAEAYN 1200 VHDLREVFDR MLCHTLEDKP VVRWVKAVTW PPGRHYAHVE FNSESAANAI MDAYIEQTAE 1260 FCLNDAAFCM FRHQKYVRPG AVYKTTNHGV LNLNLTVEVN QEKKSIKNLS LESQSSEQCL 1320 DALELDGEEG DESLDESVQA VHMDMKPDEM AAAVHAVHAV PALIKGVNEV TEQGNVGGWS 1380 THLYKTRLCN KFNNGGCPYG ARCRYAHGVE ELLRPAPPQM PHAQGRRSAV TPPLGSSSST 1440 GLTTDFTGRQ DTTDTGDEYV DPKSVICVRG VADGLTSFSL KGAMNELFER TLKTTGVLEF 1500 GKHVVRYSQF KDNSKQALVT LLNVEAPTAI LSVVKPLKIA GQPLVILPWS NMQQQKLQPL 1560 PKVNAGQPGF QPTFNLGDTH DVLSSSPGNS RAPHGWLPPS WSGPEQPWSV HPPGLSSVEC 1620 PPHVGQFGPP PQTGMVPLPF LPTQGQPDFG RPPLPSGPLC HPSFGPHNGI RPPPPWTLSP 1680 PIPSIHHLQS PGGDGWPAPP SAWVEPHHGL HPGNFGWRHN EGVLHPDLIS PPLQQHRDGV 1740 HRMHFSHEDT KFRAELLCQS SNKIDKNTGG WLEDDDDEEP GMPASEPATG DGDRRGVDPE 1800 GGRIISEEAS ASNVDPFQHK QTKILSPAKN PSPVGIAIG*

Sequence ? help Back to Top

Protein Sequence Length: 1840 aa Download sequence Send to blast

MKADYKERLK IVLQVLQPLQ FSKALIIRTV RNLLNVYGVE AGWSYIEEDE YKNVLNCIVA  60
ERNEKRGQKI SHAPTQTESA GETQHVHESN RRFGKTTGPT QAIHVSPAAE MSTENCAPSH  120
HEDPDSPDIH QHQRWLWSQK IGIPPLACFR ETSPVLGAEE PEVLLGSLGS PGNVTSDTEK  180
SHEDNVPSND KPNREVQDSW DADGSNFPKP SKGRCRIRKA GRSGALLEPR DEAAPAQELM  240
HVSPVSDFEV EGQNQQDLCQ DVSRSAEKLK NDKGGIGEAD WTPKNFFRKV VSDSNQAPIS  300
CQSQSCEQEG GVANDSHDDM DMRGKLGGQI KTRDPLDHRD LPTVKRIVGV KGKRPDQIFP  360
VKKVLNSESD DLAATPLPPK KARLGANAVD IQSCPPVVGG KVPKGSGCGL LSMDSEEKKM  420
VPGNKSSTKL QGVATKARGD QAEGDSLFGI PGVATALVIT RDGTATKEID VGRTTAFKLG  480
GKKGSSSFLQ RQKRSVTIAE DFSNRHISHV DTWSLEACLT RAPPLGSPPS GLRFNAKVSA  540
VTNCSSDHDQ LLVGQGANAG ELVIDPTYTV TKPDTHTVLP LNKVPQPSLS GEVSNHETAR  600
AAGSGIAGSS SNILPELDKY NMQLPSPLSV SELDEAPSPE LPPGFANQIS HKRDLVAAVA  660
LHQPGCAISN LQKLQEHKDF PERAIPGHVW GPVSQVRPTA PILLDNSCTA SAAPCTSGPL  720
QPQSPLLAQS SPIENPSGKL ASVLRPINTS VKSELTPPGP GFQIQSSIPP FMPPRLPPNQ  780
FPSVAGMVSP DLADSLPQRP LPPLPSGGTQ LKQECSFGPL HPPGPSNVFP PEASCLSSPR  840
PTSPHSNNGT QQSSSAIPSG WPSSVPSVPP SQLFPPGMEP VTSMTVTGTP LGSRLSSTAP  900
SPTSLISNSF PPPMGTNSAI PSVGHKGFDA RRDAREHAKS IFVGNIPVGL VNTILVIREA  960
LEAYFKPLEF VPAKSAEIQH ISLYERSTGS YAFAQFSSEV FARIVLDACQ VKSMPLQVNG  1020
VQLSVGRNLK AEMVPPMPRE RMFKGDRVLD PAKILYVGNL PEQWRSEQLL QKQFSEILGG  1080
SNPGADSNFL SEIYILPECV DVYLELSSDV VADALVYKCI KDSKLLESMG DSVFICRHPK  1140
FVPLFALASK STSCTLAIPN QNVEKPLPKD SKLAAEEELA SRWQSTLYVG NLPLTAEAYN  1200
VHDLREVFDR MLCHTLEDKP VVRWVKAVTW PPGRHYAHVE FNSESAANAI MDAYIEQTAE  1260
FCLNDAAFCM FRHQKYVRPG AVYKTTNHGV LNLNLTVEVN QEKKSIKNLS LESQSSEQCL  1320
DALELDGEEG DESLDESVQA VHMDMKPDEM AAAVHAVHAV PALIKGVNEV TEQGNVGGWS  1380
THLYKTRLCN KFNNGGCPYG ARCRYAHGVE ELLRPAPPQM PHAQGRRSAV TPPLGSSSST  1440
GLTTDFTGRQ DTTDTGDEYV DPKSVICVRG VADGLTSFSL KGAMNELFER TLKTTGVLEF  1500
GKHVVRYSQF KDNSKQALVT LLNVEAPTAI LSVVKPLKIA GQPLVILPWS NMQQQKLQPL  1560
PKVNAGQPGF QPTFNLGDTH DVLSSSPGNS RAPHGWLPPS WSGPEQPWSV HPPGLSSVEC  1620
PPHVGQFGPP PQTGMVPLPF LPTQGQPDFG RPPLPSGPLC HPSFGPHNGI RPPPPWTLSP  1680
PIPSIHHLQS PGGDGWPAPP SAWVEPHHGL HPGNFGWRHN EGVLHPDLIS PPLQQHRDGV  1740
HRMHFSHEDT KFRAELLCQS SNKIDKNTGG WLEDDDDEEP GMPASEPATG DGDRRGVDPE  1800
GGRIISEEAS ASNVDPFQHK QTKILSPAKN PSPVGIAIG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0362.2.p