PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0213.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 617aa    MW: 67500.4 Da    PI: 6.2085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0213.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-17398491192
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+k l psdv+++gr+vlpkk  e+h   + ++ ++ +++ d  +g  W+++++y  +++s++y+l+ ++ eFvka++L+ gD ++++ 
  Sphfalx0003s0213.1.p 398 FQKDLRPSDVGSLGRIVLPKKESETHlpYLTSKDGILVSMDDfDTGMAWSFRYRYwpNNRSRMYLLE-NTGEFVKAHDLERGDLLIIY- 484
                           899*************************445557899*****9999*********665666666666.******************99. PP

                           -SSSEE.. CS
                    B3  85 dgrsefel 92 
                            ++  ++l
  Sphfalx0003s0213.1.p 485 -RNPLGNL 491
                           .4455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-26393502IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-20396490IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-13398485IPR003340B3 DNA binding domain
SMARTSM010191.7E-11398499IPR003340B3 DNA binding domain
PROSITE profilePS508639.784398497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVQKTERPRV LLSQVESPRG VLAGPGWADL ASALEDLKER NSNAAAGAGR RGKEEARLTS  60
CPALDTTSSF LSPDFHQMSH PAAGGPPIEL GSGNFSVELG SVSYSRTPSP SNNSRASADH  120
YYDQDPNHLS PDDISFLNDG AVRAMFKRVL VNEALMNQAI ERLGGGGKGM KGLIGYIKLW  180
VRQTRSVESS VYLQCRENLE TLQQQEVPES SQGPSTVSDH SNASSPHGHH PKTTTWLEHG  240
TDRSEANNSS SSSLKRPFPF EPLCQSADGA YFPHESKVHR LYGGAFSNME INSGFSTREQ  300
LVSSITGEEL TTNPAPTVST SGMNPMNSPQ GTFAYNNMVN RPMASSLLLT GSRFGLDADN  360
NSNLSPAASN RAARKNRLAQ QRQVSCNVWK TDSLFLLFQK DLRPSDVGSL GRIVLPKKES  420
ETHLPYLTSK DGILVSMDDF DTGMAWSFRY RYWPNNRSRM YLLENTGEFV KAHDLERGDL  480
LIIYRNPLGN LVIRGKKNGC SETFVPTGVH LPNDLATMVC SEGKSVKVEE MCDGRLHLNV  540
PIEGFGMVAP FDTFLEDMMQ GIQNECEQHG EQGLQPLERY ASLDSDYVND SFGLMAAEDS  600
ISQLAPKGAG KLKYSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-333964973105B3 domain-containing transcription factor FUS3
6j9b_D4e-333964973105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-35B3 family protein