PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0003s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 687aa MW: 74982.5 Da PI: 6.0782 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.6 | 1.4e-111 | 322 | 685 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevs 88 lv+lLl+cAeav++++ +la+ +L rls l+ ++g++mqRlaa+f+ ALaar+++ + s+ y+ l+ + +s+ l a+++++e + Sphfalx0003s0080.1.p 322 LVHLLLACAEAVANEQVSLAHVILVRLSSLVVQRGNTMQRLAAVFMDALAARVMKaTDSGPYRGLAGDISV--PVSDMLEAYSVLYEST 408 68*****************************************************5556667666555554..39************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 P+ kf+hlt+Nq +l+ave+e+++H++D+di +G+QWpa+lqaLa Rp+gpp++R+T++g+ s + le +e+L+++A++l+vpfe Sphfalx0003s0080.1.p 409 PLGKFAHLTCNQILLDAVERENCIHVLDLDIWHGMQWPAFLQALALRPGGPPRVRMTAIGA----SFNDLEVAREKLQEYATKLQVPFE 493 *************************************************************....99********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f + +++rl ++++ + ++++gE+l++n +qlhrll + +++ +++L ++sl+P+vv ++e++ dhns+ Fl+rf+e+l+yysa Sphfalx0003s0080.1.p 494 FCP-IVERLVNFHVGMVQLHEGEVLVINTFIQLHRLL---IKGDEKFQQFLCDLRSLNPRVVALAENDGDHNSPVFLHRFVECLRYYSA 578 ***.79*******************************...66666678***************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fd+++++l ++s + k+E+ + g++i+n++aceg++r+erhe++ +W++r+e+aGF+ v++s+ a +qa+lll+ + g+++++e+ Sphfalx0003s0080.1.p 579 IFDAFDTSLQHNSLALLKIEQIFSGQKIRNIIACEGSARVERHESMLNWSRRMEAAGFRGVQISTCAFSQAHLLLSLYFHSGFTLNSEH 667 ***************************************************************************************** PP GRAS 356 gslvlgWkdrpLvsvSaW 373 g lv gW + L+ vSaW Sphfalx0003s0080.1.p 668 GYLVAGWYNVGLMGVSAW 685 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.128 | 296 | 666 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-109 | 322 | 685 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MATLARSNTA ADGELASIFG LQHHNMHATS AHHATGTAVD CLVQNNCMSS MQEESFYRES 60 RYPFTRSSPS SCDNKCGSTS ENAMMLLGNK SSKVVVVQDP HPLHHHAYSS SQGGGGSPSP 120 GALTQGSGSP FELLRAISPF TPAALIRSDR EPIFGDSIQQ ASSPDGLDGL LRTMQQQQAG 180 GLEHLTVGFA TPSQHFDHDT PPPPPPSSWT DDHMGGVGFQ GRESDLYHLG TVVHQEPTAL 240 QQNGSWMVPD GSNGWLCANW NASGSGGGAQ NHNSMTILQQ QQQQQQQQQN CGLEEEDVNA 300 DSGRGMIPEQ SPSSMGATGL QLVHLLLACA EAVANEQVSL AHVILVRLSS LVVQRGNTMQ 360 RLAAVFMDAL AARVMKATDS GPYRGLAGDI SVPVSDMLEA YSVLYESTPL GKFAHLTCNQ 420 ILLDAVEREN CIHVLDLDIW HGMQWPAFLQ ALALRPGGPP RVRMTAIGAS FNDLEVAREK 480 LQEYATKLQV PFEFCPIVER LVNFHVGMVQ LHEGEVLVIN TFIQLHRLLI KGDEKFQQFL 540 CDLRSLNPRV VALAENDGDH NSPVFLHRFV ECLRYYSAIF DAFDTSLQHN SLALLKIEQI 600 FSGQKIRNII ACEGSARVER HESMLNWSRR MEAAGFRGVQ ISTCAFSQAH LLLSLYFHSG 660 FTLNSEHGYL VAGWYNVGLM GVSAWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-68 | 329 | 686 | 26 | 379 | Protein SCARECROW |
5b3h_A | 5e-68 | 329 | 686 | 25 | 378 | Protein SCARECROW |
5b3h_D | 5e-68 | 329 | 686 | 25 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388062.1 | 1e-146 | DELLA protein RGL1-like | ||||
Refseq | XP_024388063.1 | 1e-146 | DELLA protein RGL1-like | ||||
Refseq | XP_024388065.1 | 1e-146 | DELLA protein RGL1-like | ||||
Refseq | XP_024388066.1 | 1e-146 | DELLA protein RGL1-like | ||||
Refseq | XP_024388067.1 | 1e-146 | DELLA protein RGL1-like | ||||
TrEMBL | A0A176WU48 | 1e-159 | A0A176WU48_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6VXY4 | 1e-161 | A0A2R6VXY4_MARPO; Uncharacterized protein | ||||
STRING | PP1S31_35V6.2 | 1e-145 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-78 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0003s0080.1.p |