PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0035.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 325aa    MW: 36847.9 Da    PI: 7.8499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.6e-1672159286
              trihelix   2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           W+ +e l+Li+a++e  er  + k       ++ +W+ v+ +m+ + +ers  qC++kwen+ k+yk ++e++  +  +++    yf++
  Sphfalx0003s0035.1.p  72 WSVSEMLTLIDAKKEERERCHSYKiqgvklPAAEKWRIVATHMETKSMERSGSQCQDKWENMMKDYKVVREWQFVGGGGAK---NYFRD 157
                           9******************9986556666699****************************************977633333...57777 PP

              trihelix  85 le 86 
                           ++
  Sphfalx0003s0035.1.p 158 MT 159
                           75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.96864134IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.0E-666135IPR009057Homeodomain-like
SMARTSM007170.001568136IPR001005SANT/Myb domain
PfamPF138371.6E-1770158No hitNo description
SuperFamilySSF466896.01E-597144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MCVLASEEPP IFEQEMEENG VDEASEPFQE DIVATMSAPH NKFFSPSIGN GDSCLNGRDS  60
NLNKKRSRSA PWSVSEMLTL IDAKKEERER CHSYKIQGVK LPAAEKWRIV ATHMETKSME  120
RSGSQCQDKW ENMMKDYKVV REWQFVGGGG AKNYFRDMTN KERKDASLPP QMDEIVFSNL  180
HAIQNEKEEK KDKAKWKDKD CKQQAPTLQV GQISPPLGIS LKDKIGSSGA NDMESMDTNS  240
STKRKRRKKL QQHIDLDNHA MINDFVHAMK DGSKDFIDCL IKVLERNDKR QEVAQMENKP  300
KDIATLARVL VTLSDAVKLV AQKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KRKRRK
2242248KRKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400407.11e-138trihelix transcription factor ASR3-like
TrEMBLA9T0V71e-136A9T0V7_PHYPA; Predicted protein
STRINGPP1S148_18V6.11e-137(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-13Trihelix family protein