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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sphfalx0002s0156.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | MYB | ||||||||
| Protein Properties | Length: 1110aa MW: 118720 Da PI: 6.3533 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l
Sphfalx0002s0156.1.p 55 KGGWTPEEDEVLRRAVQWHKGKNWKKIAEFFT-DRTDVQCLHRWQKVL 101
688****************************9.************986 PP
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| 2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed++++++v+++G W+ Ia++++ gR +kqc++rw+++l
Sphfalx0002s0156.1.p 107 KGAWTKSEDDRILELVTKHGATKWSMIAQHLP-GRIGKQCRERWHNHL 153
79******************************.*************97 PP
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| 3 | Myb_DNA-binding | 57.2 | 3.8e-18 | 159 | 203 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT++Ed+ l++a+k++G++ W+ Ia+ ++ gRt++++k++w++
Sphfalx0002s0156.1.p 159 REAWTEQEDLTLIHAHKLYGNK-WAEIAKFLP-GRTDNSIKNHWHST 203
789*******************.*********.***********975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 16.383 | 50 | 101 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.15E-15 | 52 | 108 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.7E-13 | 54 | 103 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.4E-13 | 55 | 101 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.5E-21 | 57 | 113 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.19E-12 | 58 | 101 | No hit | No description |
| PROSITE profile | PS51294 | 31.742 | 102 | 157 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.87E-31 | 104 | 200 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.8E-16 | 106 | 155 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.4E-16 | 107 | 153 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.14E-14 | 109 | 153 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 114 | 160 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 9.0E-18 | 158 | 206 | IPR001005 | SANT/Myb domain |
| PROSITE profile | PS51294 | 24.751 | 158 | 208 | IPR017930 | Myb domain |
| Pfam | PF00249 | 1.4E-16 | 159 | 202 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.11E-13 | 161 | 201 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 161 | 208 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1110 aa Download sequence Send to blast |
MASFNVPPGN NGITENVQQQ RSSGCSSGAE SDDDTSHQLP PVHGRTGGPT RRSSKGGWTP 60 EEDEVLRRAV QWHKGKNWKK IAEFFTDRTD VQCLHRWQKV LNPDLVKGAW TKSEDDRILE 120 LVTKHGATKW SMIAQHLPGR IGKQCRERWH NHLNPNIKRE AWTEQEDLTL IHAHKLYGNK 180 WAEIAKFLPG RTDNSIKNHW HSTMKKKVDP ATATDPVSKA LAAYQAHQES MNPINSVDQL 240 ESSVSMVGKV GLLTNEATTS SQLIRDIHAA SGTPSMTQPL QFGEQYNEAK SANAAPSSTA 300 YCILSANHEN DPKKIGKGAH MQKEHSSCEA LAVHSGSGTL QQSCDVSPQS SGQSQGYSGW 360 SSNQSLGYSV GFAGVPMSRT LVPSLLSQQL PLGSLPESGL LSTVELPILP SFSVVRPALE 420 MASSSSQEFQ NSSVPISMCA TGSFISAGNV PVTSSNLMPS NDTLSNRSMV TNEGNLTLMD 480 PNMQTFEWMR SCLFSKSPFA APVALPSGHC DTEAEECSME VVGYQDEHLK AANQAVNLKM 540 SGPAPELDGS MGIALDALFY EPPRIACLAD SPFPSYDLIQ GGQSLQAYSP LGVRQMIMPP 600 GNCITPPPYE LPQSPLQDCS PQSILRSAAR SFSGSPSILR KRPRPLTIPP KPRSVCDKRD 660 EQLGQTRMSR GSQDNAVGLS GSMKTADDSM DGKPSEGSAK AAACQARTAL FVSPPYHLGK 720 TSSKVSGAED TGSDVPNDTQ YTSPDCAIDS SGKVGGNSTT LSARDGRHGA ACSNGPWESA 780 GGKYNKRGRP QGLNHECDMG TRRRGGTTVP VKTFQDGSLL FEHQTAGQGQ PCFPLDANTL 840 PTHLVMLPGA ENDGNPKVLG SKHGFSDMRA SSCEAGVVGT GGLMSGTVLS RSDRREMMSP 900 GAMSTFGVWG SVTCASTGVA VLHHTPAKDW LTELESFFAS PTTIWREPWR MDPSPSAQKD 960 GGISFLEELE AAVDRGVDDA LGIMQHLSEQ NASAYCEAEE ILAKPPSAEC MPSPPPCYQT 1020 RADANQNAHD CKENIRGGSD SVDGGTSSFV NWLSPFHVDF LSPDGAVAGT PVRGVSSVSL 1080 TGGADDNHLV SGGACDAFSP SMYLLKECR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 4e-70 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 4e-70 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 640 | 644 | KRPRP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G11510.2 | 8e-85 | myb domain protein 3r-4 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sphfalx0002s0156.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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