PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0133.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 383aa    MW: 40502.7 Da    PI: 10.0413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-1490134347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Sphfalx0002s0133.1.p  90 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVQTRTPTQVASHAQKY 134
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.026520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.9183139IPR017930Myb domain
SuperFamilySSF466891.12E-1785140IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-1886138IPR006447Myb domain, plants
SMARTSM007171.6E-1187137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1187133IPR009057Homeodomain-like
PfamPF002491.3E-1190134IPR001005SANT/Myb domain
CDDcd001678.26E-1090135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MARGCSHCGH NGHNSRTCPD RGVRLFGVRL TDGVMRKSVS MSNLSHYASV VANPPSPPEH  60
SGSGATPDGY VSDGLVQTSN NARERKKGVP WTEEEHRLFL LGLQKLGKGD WRGISRNFVQ  120
TRTPTQVASH AQKYFIRQSN LNKRKRRSSL FDIISETGPS PMVEEPIPNS ASDMAAPLPQ  180
LSLGPSSMFA PGLYYDTQGF GISVRPFGLP THMEGVPTHM EATVAVPMMS LGNGLLGAST  240
EQSSSGVGLA FSSDTARPVL QRPVALPSSG AVPPNGPLGI SNLPYAIPMW SGVSSQAYSR  300
PANSPSLNSK VVRPTASIPT APVKIDEAKE VSQLSLGLSP PEPSQLTLKL LDPPSRHSSA  360
FHVNSSFSSS SISSSSNAIS VV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390573.11e-155transcription factor KUA1-like isoform X1
RefseqXP_024390574.11e-155transcription factor KUA1-like isoform X1
TrEMBLA0A2K1JQS51e-153A0A2K1JQS5_PHYPA; Uncharacterized protein
STRINGPP1S70_203V6.11e-154(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-67MYB_related family protein