PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0002s0005.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 296aa MW: 31045.5 Da PI: 6.1667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0002s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	90	135	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq Sphfalx0002s0005.1.p 90 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 135 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-17	83	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.72E-14	83	139	No hit	No description
PROSITE profile	PS50888	17.453	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	87	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	90	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-14	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVPHLPMNPA QTKAEHVLCH GEFSSQDAPS LGKRFREDDE DSLCEKHSGI TGNGPTSAPS 60 GFGGSPQQGL PSVGGRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNSNKTDK 120 ASMLDEIIDY VKFLQLQVKI LSMSRLGGAG AVAPTTSDLP AEGSNNMSAT ISHSSGTPSP 180 VQDGIALTER QVTQLLEDDM GSAMQYLQSK GLCLMPIALA TAISTTNNSR GAQGGVGDRQ 240 RTSAAGSNGG LITDGLVNSE QASKDNSREV ESINGTTSMG THNGPECEGK LTDGP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394843.1	7e-99	transcription factor bHLH76-like isoform X1
Refseq	XP_024394844.1	8e-99	transcription factor bHLH85-like isoform X2
Swissprot	Q9LSQ3	1e-67	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A2K1JI03	2e-97	A0A2K1JI03_PHYPA; Uncharacterized protein
STRING	PP1S209_22V6.2	3e-98	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-51	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Sphfalx0002s0005.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]