PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0234.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 682aa MW: 73514.3 Da PI: 5.8744

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0234.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1.1e-31	354	408	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtpeLHe+Fv av+ LGG+++AtPk++l++m+v+g+t++hvkSHLQkYRl Sphfalx0001s0234.1.p 354 KSRLRWTPELHEKFVAAVSDLGGADRATPKAVLRIMGVQGITIYHVKSHLQKYRL 408 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.56	351	411	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	353	408	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	354	409	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.0E-30	354	409	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-8	356	407	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-21	440	483	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MLMNRQGMEG WQQPSQVSNS HAAAAASPDP AAPVVVTMPT PQLNPHRAFA RPNPPGKTQG 60 GRGPAWAAME GSSSSSSSSA AFTQPRHGYY QPPPPLPPQM ENQRQVGMHG DSGMSSQYQY 120 PQSQGPYPAQ PGPGTEPSSP HYGQQQQMSA HHSYQSPAHW SPGAQWPNHH QQQQQHPVPL 180 PPALQQSGGH WQAGNKQLLP SPTGLAGQSD TTAALHSCAL DQANGPKTQD NRDGTDFRDQ 240 LQVLLDSPDG DGDSSQMGEQ SVNDGFGAGP EWLKWTELVP QEETIANCWT EIIDVESGEE 300 RTLFQTTRFE PLAPTTLQPR SLPTDQQPSG SAGGQYPESP GPSSAAAAAA AAVKSRLRWT 360 PELHEKFVAA VSDLGGADRA TPKAVLRIMG VQGITIYHVK SHLQKYRLAK YMPEISEETR 420 AERRRNDTYL QPMGISSSQQ ITQALQMQME VQKRLHEQLE VQRELQLRIE AQGKSLQKMI 480 EQQGGMVSRC WSEPHDPSSL ATVPATPVPE TPVRSSIVPV TDSPHQASAL ESDIPVTDRA 540 PLPASTVDQP DLKHERLISE PKEDQPPPAL ITSNEEPSLK KARMDVNPQA SSLVQVPVSV 600 TSDAQRGGGS DTQENVQQEV GLETSPEMVT QKLTSPALEA QEVTEGHQAH SFAQCTPQQG 660 HTACAPPHPG SIAHKPVHAS G*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MLMNRQGMEG WQQPSQVSNS HAAAAASPDP AAPVVVTMPT PQLNPHRAFA RPNPPGKTQG  60
GRGPAWAAME GSSSSSSSSA AFTQPRHGYY QPPPPLPPQM ENQRQVGMHG DSGMSSQYQY  120
PQSQGPYPAQ PGPGTEPSSP HYGQQQQMSA HHSYQSPAHW SPGAQWPNHH QQQQQHPVPL  180
PPALQQSGGH WQAGNKQLLP SPTGLAGQSD TTAALHSCAL DQANGPKTQD NRDGTDFRDQ  240
LQVLLDSPDG DGDSSQMGEQ SVNDGFGAGP EWLKWTELVP QEETIANCWT EIIDVESGEE  300
RTLFQTTRFE PLAPTTLQPR SLPTDQQPSG SAGGQYPESP GPSSAAAAAA AAVKSRLRWT  360
PELHEKFVAA VSDLGGADRA TPKAVLRIMG VQGITIYHVK SHLQKYRLAK YMPEISEETR  420
AERRRNDTYL QPMGISSSQQ ITQALQMQME VQKRLHEQLE VQRELQLRIE AQGKSLQKMI  480
EQQGGMVSRC WSEPHDPSSL ATVPATPVPE TPVRSSIVPV TDSPHQASAL ESDIPVTDRA  540
PLPASTVDQP DLKHERLISE PKEDQPPPAL ITSNEEPSLK KARMDVNPQA SSLVQVPVSV  600
TSDAQRGGGS DTQENVQQEV GLETSPEMVT QKLTSPALEA QEVTEGHQAH SFAQCTPQQG  660
HTACAPPHPG SIAHKPVHAS G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	354	411	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	354	411	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	354	411	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	354	411	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	354	411	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0234.1.p