PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0196.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | AP2 | ||||||||
Protein Properties | Length: 875aa MW: 94831.4 Da PI: 6.9758 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45 | 2.7e-14 | 353 | 412 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Sphfalx0000s0196.1.p 353 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 412 78*******************655454478446**********99*************98 PP | |||||||
2 | AP2 | 45.2 | 2.4e-14 | 457 | 506 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg++ t eeAa+a++ a+ k++g Sphfalx0000s0196.1.p 457 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 506 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.17E-20 | 353 | 422 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-16 | 353 | 422 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-11 | 353 | 412 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 354 | 420 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-27 | 354 | 426 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-15 | 354 | 421 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 355 | 366 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.43E-22 | 455 | 516 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-17 | 455 | 516 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-32 | 456 | 520 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 456 | 515 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 456 | 514 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-9 | 457 | 506 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 496 | 516 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MRSSSDDHES LCIMEALSRS QNSVDHWQLQ ARAIQAADTS HGIRETQSHN LFAVDQLSRL 60 TVNTGAVDHQ FQGASPGAHY DHMQGPSTSS AETRDGPKLE DFLGGKSLGG EYSDSDHHSH 120 HHPQLEGLYY NAAHGAASFQ EGQARINVNL PYTHSGTGGS GALLRDMALN STFHLAYTSA 180 VSQQDQSSLT LNHLNHCYEA NEQQLQESNL LAQSGSHLRH VVQRTALDQQ QSDCSLQMPQ 240 GSSLGLKSWF RHQADADSKA GAAPLELQVR HGSSLSAALA SWQPLSLSMS AASSHVTDHA 300 VDQQLVLPGQ LQVTESSQAA APESRKRGAG RMGAGKDGLP ARKATDTFGQ RTSVYRGVTR 360 HRWTGRYEAH LWDNSCRKEG QTRKGRQVYL GGYDKEDKAA RAYDLAALKY WGSSTTINFP 420 LSTYEAELEV MKNMTRQEYV ASLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK 480 DLYLGTYSTQ EEAAEAYDIA AIKFRGVDAV TNFDMSRYDP QKICAAAING QEISFKCKRA 540 DQKMITELVS TPSSDGVTCV GDKNHWPVTS SLATGTVPDS RIELMRSDQD HLSVAPCGLS 600 KNLLEWQMLY QQQTVGHHEH ERTSWGHATG QDTCSTANEI QGAAGQESTC AHLGFGLDTL 660 WAPASHASSK YNRSTVPSNG TLPRNLIGLD IPPQEHGGGE SPCTAGSSGL MNHHHGLPSS 720 AASLLSSSPG YQGRPGQQTM QPAGYEHVGT ATTDQQLQTS DNRAIRSSGL AYNHGSRDRS 780 DVHMESPNNS IGESEEASSK NSTFDRVLPG DLSRNLLFSS VITSPVKMNP SYLANPSATW 840 TGISNPLAIP MLLAQPANLS HMGSGPIFAH SWTE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396531.1 | 0.0 | uncharacterized protein LOC112292371 isoform X1 | ||||
TrEMBL | A0A2K1JEI2 | 0.0 | A0A2K1JEI2_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-108 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0196.1.p |