PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.K044414.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13411.9 Da PI: 7.9177 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.4e-12 | 47 | 107 | 32 | 98 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +tl de+ ++ + + + ++ l++GW +Fv +++L +gD +vF+l++r+ f +v ++r Sobic.K044414.1.p 47 LCIGITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 107 556799*************..6666..569************************98777..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 1.4E-9 | 45 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.94E-13 | 47 | 107 | No hit | No description |
PROSITE profile | PS50863 | 9.178 | 51 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-12 | 51 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-10 | 59 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MLVLMLTCFL VPLLRYGGGS VGQARIWKLL GILTLLGGRK LADKSALCIG ITLVDEEDDK 60 FCMLYQPSKA ALSTGWGGFV VDHKLLDGDC LVFQLIERTM FKVYIIRAAS YLKASTDEAS 120 SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.K044414.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311549.1 | 2e-45 | B3 domain-containing protein Os06g0194400 isoform X1 | ||||
Refseq | XP_021311550.1 | 2e-45 | B3 domain-containing protein Os06g0194400 isoform X2 | ||||
Swissprot | Q69V36 | 3e-23 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1W0VQL5 | 2e-82 | A0A1W0VQL5_SORBI; Uncharacterized protein | ||||
STRING | Sb3113s002020.1 | 7e-37 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.K044414.1.p |
Publications ? help Back to Top | |||
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