PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.K042700.1.p | ||||||||
Common Name | SORBI_K042700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 27143.1 Da PI: 10.2669 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.1 | 6.4e-20 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+ + rqv+fskRr ++KKA+ELS+LC+aeva++ fs+ g+ + + Sobic.K042700.1.p 16 KTIKGEEARQVSFSKRRPSLFKKASELSTLCGAEVAIVTFSPGGRCFSF 64 56888999**********************************9987766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-25 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.1 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 9 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-22 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MVKGKSTKGR QRIEMKTIKG EEARQVSFSK RRPSLFKKAS ELSTLCGAEV AIVTFSPGGR 60 CFSFGHPSTL SVADRFLVEH TLDGLTIGSG SHGTQGLTGT SHEMNHQVME LQQLMETEKR 120 SKERAVEAMK RESQGPVMQL LNANVGALGL QELEVLRKDL YMVHDMVKER SHEVLEDAMR 180 VRRPPPQPRM HMVAMPSQVF FGGQSAGTMY TTFPSLSNGP RKGVHVNSLL HGSLGGLGNY 240 FNGQFGG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.K042700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445266.2 | 1e-141 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A109ND60 | 0.0 | A0A109ND60_SORBI; Uncharacterized protein | ||||
STRING | Sb06g015640.1 | 1e-152 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-31 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.K042700.1.p |