PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G259400.1.p | ||||||||
Common Name | Sb10g029595, SORBIDRAFT_10g029595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23135.1 Da PI: 9.8096 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.9 | 5.9e-32 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka ++ r++a+++l++eA++r rdP G+++ ++ l+++ + Sobic.010G259400.1.p 11 ACAVCKHQRRKCEPNCELATYFPAHRMNDFRALHLVFGVANLTKLIKANaSDAARRRAAETLTWEARWRERDPSDGCYREVSCLRRDNA 99 7**********************************************9835555*********************************** PP DUF260 89 qlkaelallkee 100 l+ae a+l+++ Sobic.010G259400.1.p 100 VLRAENAALRRQ 111 *****9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.638 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-28 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTGGGNGGRG ACAVCKHQRR KCEPNCELAT YFPAHRMNDF RALHLVFGVA NLTKLIKANA 60 SDAARRRAAE TLTWEARWRE RDPSDGCYRE VSCLRRDNAV LRAENAALRR QLAEQQQLLL 120 CWSNACSNTG GALLHSASAN NGTPPCGGDG LLTAARPHHA PAAPAAMHTT LAYRGMPVCT 180 MTTANGGGRR PASDAAAIAI RGGGGQVDAS RDNKSSAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 7 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 7 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G259400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973222 | 1e-150 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437573.2 | 1e-158 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A194YLK3 | 1e-157 | A0A194YLK3_SORBI; Uncharacterized protein | ||||
STRING | Sb10g029595.1 | 1e-150 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 | Representative plant | OGRP14214 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 4e-21 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G259400.1.p |
Entrez Gene | 8064971 |