PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G249200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 353aa    MW: 37508.8 Da    PI: 4.8995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G249200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17262298135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cgt    Tp++Rrgpdg++tLCnaCGl+++ kgl
  Sobic.010G249200.1.p 262 CHHCGTNAtaTPMMRRGPDGPRTLCNACGLMWANKGL 298
                           ******9989***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.6E-12127162IPR010399Tify domain
PROSITE profilePS5132015.373127162IPR010399Tify domain
PfamPF062005.4E-13130161IPR010399Tify domain
PROSITE profilePS5101713.334186228IPR010402CCT domain
PfamPF062031.1E-15186228IPR010402CCT domain
PROSITE profilePS501149.671256315IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-13256314IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-12260309No hitNo description
Gene3DG3DSA:3.30.50.105.2E-16261303IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.41E-15261304No hitNo description
PROSITE patternPS003440262289IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15262298IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERHP QPADGMAAPP PAAVGPSVEH LVAAAAEAEA LNRFAVEPQV  60
HEQEVGEEEE EDEEEDEMEE EEDEQEGQHG GIGGEHVPMD ADAAAAAAAA AGAQMDPHSA  120
MVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLGG ASSSAPYSKR  180
LNFPHRVASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEIAASEM  240
AAVDGSPNWA LVEGRPPSAA ECHHCGTNAT ATPMMRRGPD GPRTLCNACG LMWANKGLLR  300
DLSKSPVPLQ VMQSAPLLDG GQNGNVMSAP GSELENAAAA MTNGHESSSS GV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.124700.0callus| ovary
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G249200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5128720.0KU512872.1 Zea mays TIFY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304766.10.0GATA transcription factor 20-like isoform X1
SwissprotQ5Z4U51e-138GAT20_ORYSJ; GATA transcription factor 20
TrEMBLC5Z8W20.0C5Z8W2_SORBI; Uncharacterized protein
STRINGSb10g028750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-65ZIM-like 1