PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G218500.1.p

Common Name

Sb10g026450, SORBIDRAFT_10g026450

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 288aa MW: 31019.4 Da PI: 5.1035

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G218500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.4	1.2e-16	123	177	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e kr rr+ +NRe+ArrsR+RK+a++ eLe v+ L++eN +L ++l+e +++ + Sobic.010G218500.1.p 123 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVERLKGENATLFQRLSEANQQFS 177 579*****************************************99988887755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-16	121	185	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-14	123	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.507	123	175	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-12	125	176	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-13	125	176	No hit	No description
PROSITE pattern	PS00036	0	128	143	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MKKCASELEL EAFIRESGDD DARAAAAGRS NHGCGGPGEP GGSAVVFSPG VGFAESNTMD 60 DSSWWYGSVR TPNPVMSRTA SISASLEATT SANHALESES DSDSESLYEV EGVPYERGNK 120 SVETKRIRRM VSNRESARRS RRRKQAQLSE LESQVERLKG ENATLFQRLS EANQQFSTAV 180 TDNRILKSDV EALRVKVKMA EDMVARSAIS CGLGDLGLAP YLNSRKMCQA LNMLTTTGLD 240 LLGSDAFRGP TTAPQVQNSP VQSTASLENL DNRKSNEVTS CAADIWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	144	RRSRRRKQ
2	139	144	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.6099	0.0	leaf\| pollen

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G218500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061821	0.0	BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds.
GenBank	EU966841	0.0	EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438798.1	0.0	basic leucine zipper 9 isoform X2
Swissprot	Q654B3	3e-99	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	C5Z7B6	0.0	C5Z7B6_SORBI; Uncharacterized protein
STRING	Sb10g026450.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96
Representative plant	OGRP6956	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-28	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Sobic.010G218500.1.p
Entrez Gene	8069381

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]