PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G191900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 672aa    MW: 72439.2 Da    PI: 7.1788
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G191900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.5e-27178231155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v+gLt ++v+SHLQkYR+
  Sobic.010G191900.1.p 178 KQRVQWCGELHRKFVEAVNQI-GMDRAVPKKILEVMNVEGLTKQNVASHLQKYRI 231
                           79*******************.********************************6 PP
2Response_reg62.12.8e-21121241108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTT CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg..mdGlellkeireeepklpiivvtahge 82 
                           vl v+ +++  ++l++ l+  +y +++ +++++ al++l+e++     +Dl++  + mp+  mdG++ll+ i  e  +lp+i+++a++e
  Sobic.010G191900.1.p  12 VLAVEHDRVCSKILERQLKYCNY-NATMVTNAQTALDMLRERKeygnqFDLVISNVAMPKpnMDGFKLLELIGLEM-DLPVIMLSANSE 98 
                           789999*****************.***************999999**************999**********6644.8*********** PP

                           HHHHHHHHHTTESEEEESS--HHHHH CS
          Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                            +++++ +k Ga d+ +Kp+  e+l+
  Sobic.010G191900.1.p  99 TQTIIKGIKHGACDYMVKPVRLEQLR 124
                           ***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.13E-289136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-339176No hitNo description
SMARTSM004483.0E-2310127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.21411131IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-1812124IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.80E-2113124No hitNo description
PROSITE profilePS5129411.176175234IPR017930Myb domain
SuperFamilySSF466891.79E-18175235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27177235IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24178231IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAADTFPAGL RVLAVEHDRV CSKILERQLK YCNYNATMVT NAQTALDMLR ERKEYGNQFD  60
LVISNVAMPK PNMDGFKLLE LIGLEMDLPV IMLSANSETQ TIIKGIKHGA CDYMVKPVRL  120
EQLRGIWTHV VKNRKFPSGD GDNVEKVGAN HAKKYSRKNK KAVDVADEDN ESTSTQKKQR  180
VQWCGELHRK FVEAVNQIGM DRAVPKKILE VMNVEGLTKQ NVASHLQKYR IFLRKLREGT  240
LKNSNPFADE TEALRRNMSL PSFIGSPSSS NHCAKMNSSS AIGTQASLHT GSVQVMSSQK  300
NLGIPQSNME PVGHCVNLPK DGVPMAVQDI SRFISSGKSY APVSSGWLPG ASQCFPSGPS  360
GSSFANSSNG VVLNASKPFF VDISGGSFAN ISNDSPPLTS NMSFSLSRSC SSYASILPGK  420
ILGSSRGIPF EDISDGEILA PPGHLPLQSP DLVNQPSIQF QSCSAGKFNQ VASEAHQIAG  480
PSNSSKAAVP SRFSDLGHNV GTSEDPSQGN IFKINQLSRF AGSSGQISTF RNEYKRKIAG  540
IMGNTVPMVG FREQVATSSF GNNTHSTAMP IGNSALASSS STRPDLQIDN NSAMPTQVLN  600
GDGASDNLHV GSTIQQAVSD QVNNINEFVV GTSEAQNEES DDWDDLLAYF NQQDFINNGG  660
PFIDGDWGSS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20174236163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G191900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305574.10.0two-component response regulator ORR25
TrEMBLA0A194YL880.0A0A194YL88_SORBI; Uncharacterized protein
STRINGSb10g024180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Representative plantOGRP1239536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-78response regulator 10