PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G169200.2.p | ||||||||
Common Name | Sb10g022210, SORBIDRAFT_10g022210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TALE | ||||||||
Protein Properties | Length: 473aa MW: 50473.7 Da PI: 7.3002 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.2e-09 | 411 | 449 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +Fe+ +yp+ +e+e LA++ gL+ +qV++WF N R + Sobic.010G169200.2.p 411 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 449 57766689*****************************88 PP | |||||||
2 | BELL | 19.9 | 1.8e-07 | 276 | 344 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++k k+ L +ll+ +d+r kq+++++q + + + g ++ + +A a+S +r L+ +i++ i Sobic.010G169200.2.p 276 HNHKLKNDLQKLLQIMDQRCKQCMDEIQSAACKYGSLVRPGGGALSAPFAHGAVSAMHRRLRARITGEI 344 45667899*********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.3E-16 | 213 | 341 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 390 | 453 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 392 | 466 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-7 | 393 | 457 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.84E-12 | 393 | 454 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-16 | 393 | 462 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-16 | 410 | 449 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MTRNCFVSGD GSDIISADAA PLFHVPEYTP SSGFGFVGEP AAADIAASSF PADGSVLLAG 60 HQLLRATALQ SVSPEETTHA GGAYGVTGGG SYSYSYVPSP WDVTVAHAPR MAKQLSIAGE 120 PAEGGWIHES SYYCPTTWFS GHAQFAGAPA SELSLRLRAG SSPTAGAVSA SLPDQSSEVS 180 CSGPGLFQPP CGAGGQVVRQ VPMHFSQVLS RWSGYANIAQ QALDEFVGCL LQDVAGFAGF 240 TTGGGEASCP LPSSSCSKTT SSSDPNPSMF LGSEEHNHKL KNDLQKLLQI MDQRCKQCMD 300 EIQSAACKYG SLVRPGGGAL SAPFAHGAVS AMHRRLRARI TGEIAAATRR GDQPSSSSSL 360 SLTLADRERS WESAFIQKHW ALRQLRRGDQ QSWRPQRGLP EKSVAVLKAW MFENFLRPYP 420 KDNEKEMLAA RSGLSRSQVS NWFINARVRL WKPMIEEMYE DLKKASGGME GV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G169200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970958 | 0.0 | EU970958.1 Zea mays clone 354689 BEL1-related homeotic protein 13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304520.1 | 0.0 | homeobox protein ATH1 isoform X2 | ||||
Refseq | XP_021304521.1 | 0.0 | homeobox protein ATH1 isoform X2 | ||||
Refseq | XP_021304522.1 | 0.0 | homeobox protein ATH1 isoform X2 | ||||
Refseq | XP_021304523.1 | 0.0 | homeobox protein ATH1 isoform X2 | ||||
TrEMBL | A0A194YJS1 | 0.0 | A0A194YJS1_SORBI; Uncharacterized protein | ||||
STRING | Sb10g022210.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 8e-51 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G169200.2.p |
Entrez Gene | 8076725 |