PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G085400.1.p | ||||||||
Common Name | Sb10g007380, SORBIDRAFT_10g007380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25035.2 Da PI: 6.4043 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvt+skRr g++KKAeEL vLCda+va+++fs tgkl ++s Sobic.010G085400.1.p 10 RIENAAARQVTYSKRRRGLFKKAEELAVLCDADVALVVFSATGKLSQFAS 59 8*********************************************9986 PP | |||||||
2 | K-box | 56.4 | 1.3e-19 | 90 | 171 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 q +++ L++++ + + +R++ Ge+Le Ls++eL+q+e++Le +l ++ s+K++l+++qi+elq+k +l++en++L++++ Sobic.010G085400.1.p 90 EQSKYTGLNEQLAEATHGLRQMRGENLEGLSVEELHQMERKLEAGLHRVLSTKDQLFTQQISELQQKGTQLEDENRRLKEQM 171 466777888888888899************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.992 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-29 | 3 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-31 | 13 | 75 | No hit | No description |
PRINTS | PR00404 | 8.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.96 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-19 | 91 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARERREIRR IENAAARQVT YSKRRRGLFK KAEELAVLCD ADVALVVFSA TGKLSQFAST 60 SMNHIIDKYS THSKNLGKSH QQSPIDLNIE QSKYTGLNEQ LAEATHGLRQ MRGENLEGLS 120 VEELHQMERK LEAGLHRVLS TKDQLFTQQI SELQQKGTQL EDENRRLKEQ MPQVLTAGTM 180 VVGAGAENIL TEDGQSSESV MTALHSGSSL DNDDGSDICL KLSLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2 days after pollination. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in palea and stamen primordia. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:15682279}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G085400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ430635 | 0.0 | AJ430635.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m21 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436710.1 | 1e-165 | MADS-box transcription factor 55 | ||||
Swissprot | Q69TG5 | 1e-107 | MAD55_ORYSJ; MADS-box transcription factor 55 | ||||
Swissprot | Q9XJ66 | 1e-107 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | C5Z6K5 | 1e-164 | C5Z6K5_SORBI; Uncharacterized protein | ||||
STRING | Sb10g007380.1 | 1e-165 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-47 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G085400.1.p |
Entrez Gene | 8080034 |
Publications ? help Back to Top | |||
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