PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G079800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 330aa MW: 35056.5 Da PI: 10.4095

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G079800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	51	4.1e-16	128	209	3	90
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +q+lw+e De++lL G + fk++tg p d+ +++e +k+s+ + + + K++rLK Kf++ v + s++h++ + Sobic.010G079800.1.p 128 VQKLWTEADEVALLTGAVAFKDRTGIAPRLpDMGELFESIKDSLAPHLDQAKVYYKLKRLKSKFQHSVPG-------ESSTAHEHRLRD 209 79**********************98877********************************98877.......344455555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-14	129	216	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MPSKRPSPHA MDEAAASAAA ARLRPSTPRS KKRTSRSKSR GRSSRDRRRS SPNPNPSSRR 60 ERAAAADHGS AGAAPSRKSD RKPKPRSFPD SATLATAMAS VAAAASASAA AAAAPSAGGG 120 GRGSAGAVQK LWTEADEVAL LTGAVAFKDR TGIAPRLPDM GELFESIKDS LAPHLDQAKV 180 YYKLKRLKSK FQHSVPGESS TAHEHRLRDL GAALWGAELA RPEENAIAVA EEADEDDADE 240 GIVGGDREGA VKLPMVKEVL GEYWRLNGQT MSGVSLEKGL AMLGPQEASV AEVKWRRQLE 300 ADMRMQMRRH DLEKEVYGLL IDAIKGLGP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G079800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956202	0.0	EU956202.1 Zea mays clone 1558951 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436676.2	0.0	STOREKEEPER protein
TrEMBL	A0A194YIZ8	0.0	A0A194YIZ8_SORBI; Uncharacterized protein
STRING	GRMZM2G008558_P02	1e-166	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63
Representative plant	OGRP12731	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	8e-10	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.010G079800.1.p