PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G065500.1.p
Common NameSb10g005650, SORBIDRAFT_10g005650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 448aa    MW: 44365.6 Da    PI: 6.8702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G065500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12224269555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sobic.010G065500.1.p 224 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 269
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17217279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16221278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-12223273No hitNo description
PfamPF000103.2E-9224269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQPSGREMAG GEGGGGPQQQ ADDFFDQMLS TLPSAWADLG AGGKSPWELT PGTGAGAAAE  60
DPAAQQSHFG DESALLASRL RQHQIGGGDV KSSASPVMLQ LSDLHRHGGL GGEESRGNGF  120
SPLPLFSDRS SVPAREEMEG GFKSPNSAGG DHSLFNGFGM HGAAAGQPQF GQSGSMSPQS  180
MGGPAASGGA PQAGGAASSA GGGGAAPPRQ QRQRARRGQA TDPHSIAERL RRERIAERMK  240
SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMASSEGNS  300
NGSGGGNNNS GGKGSGGAAS ATTTTKSGSG ENGNGNGSGG VRVTEHQVAK MMEEDMGTAM  360
QYLQGKGLCL MPISLASAIS SATSSASLLS RPPAVGRHAT AVAGQMHDAN GGAAAAATAS  420
PASAANSAGG GGGGDDSRSA RDGGGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G065500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-55BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-55KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437967.10.0transcription factor bHLH66
SwissprotQ9ZUG93e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLC5Z5I40.0C5Z5I4_SORBI; Uncharacterized protein
STRINGSb10g005650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-38LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]