PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G045700.1.p
Common NameSb10g004000, SORBIDRAFT_10g004000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 379aa    MW: 40525.9 Da    PI: 6.5726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G045700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.74.2e-27131191259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg++WrKYGqK++ g++fpr+YYrCt++    C ++k+v+rs++d  v+++tY+geH+++
  Sobic.010G045700.1.p 131 DDGFSWRKYGQKDILGAKFPRGYYRCTYRtaqACGATKQVQRSDTDLCVFDVTYQGEHTCH 191
                           8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26121192IPR003657WRKY domain
PROSITE profilePS5081122.469125188IPR003657WRKY domain
SuperFamilySSF1182901.27E-23129192IPR003657WRKY domain
SMARTSM007744.0E-38130192IPR003657WRKY domain
PfamPF031061.9E-25131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQDGAGAEAA GSSMQALLAL LADGEEQARQ LGEMMADDPW SRAEHYRGAA RRLQCTLGKA  60
AAVARAIEAA APGSSRGTDD RSDSPRSADE SSGRTTTEVQ ERQSMFKRRK GLPRWTAKFR  120
VPDASLDATP DDGFSWRKYG QKDILGAKFP RGYYRCTYRT AQACGATKQV QRSDTDLCVF  180
DVTYQGEHTC HQKQRASATV AAAPAHGAGS QSPPPPPPLE QQQQQQDPSM MQLLRLGFKR  240
VLKVETTPGL HDHGIGHRDS GPASAPAAPF SFPSASPFHL AGEATDNPAA AFSPPPASSY  300
FPAPHPVAVD GSFYDYEASP VALMRGAEPS ELGEVVTRAI TTGPAAFDYS SLFHHQAELD  360
DPHLPFPPFG GPPHGPYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191321881874Disease resistance protein RRS1
5w3x_D5e-191321881874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234243RLGFKRVLKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G045700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9006872e-35DQ900687.1 Hordeum vulgare clone BAC 455J22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436515.10.0probable WRKY transcription factor 30
TrEMBLC5Z4F20.0C5Z4F2_SORBI; Uncharacterized protein
STRINGSb10g004000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-36WRKY DNA-binding protein 30