PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G016500.1.p | ||||||||
Common Name | CBF5, Sb10g001620, SORBIDRAFT_10g001620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26230.5 Da PI: 4.5407 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 56 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ a+++l+g Sobic.010G016500.1.p 56 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 107 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-13 | 56 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-20 | 57 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.313 | 57 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 57 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 57 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEYGVADDYG YGYGGYDDQQ DLPSSSSVDG DEYATVLSAP PKRPAGRTKF RETRHPVYRG 60 VRRRGPAGRW VCEVREPNKK SRIWLGTFAT AEAAARAHDV AALALRGRAA CLNFADSARL 120 LRVDPATLAT PDDIRRAAIQ LAEDSSSSTP DASAAAAAVA VASSASVGQA TPSSSAYQAG 180 DDATGAAMYG AEYAAAAMYG AGMDFDHSYY YDGMVGGNEW QSAGSSGWHS NVDAGDDEGA 240 GDMSLWSYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 55 | 114 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.13397 | 0.0 | embryo| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G016500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY785898 | 0.0 | AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436386.1 | 1e-178 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | Q3T5N1 | 1e-177 | Q3T5N1_SORBI; SbCBF5 | ||||
STRING | Sb10g001620.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP12742 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 8e-34 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G016500.1.p |
Entrez Gene | 8069036 |
Publications ? help Back to Top | |||
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