PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G247700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 365aa    MW: 38896.4 Da    PI: 6.5054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G247700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.77.6e-26190248259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YY+C+s  +C+++k vers   p v+++tY  +H h 
  Sobic.009G247700.1.p 190 SDLWAWRKYGQKPIKGSPYPRGYYKCSSLkSCMARKLVERSPAKPGVLVVTYIADHCHA 248
                           799************************998**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.887184250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-25187250IPR003657WRKY domain
SuperFamilySSF1182907.06E-23188250IPR003657WRKY domain
SMARTSM007742.2E-30189249IPR003657WRKY domain
PfamPF031066.3E-21191247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPKSTVSVYM NPLPVSPHLG THTHARSIAM DCSNDWDLQA LVRSCGGGGT AAAAACNSGA  60
APTATRGGYD APSREAADDA SVVVGGGGRV VATAAAGQEF LGQPVAAWRR NLDYLDLVDH  120
ELLRMPFSIT PSSSRETTSG GAPGQQMIRQ PRRQPGRKPG VRTPRAKRSK KRQVKKVVCE  180
VPAAGGGVSS DLWAWRKYGQ KPIKGSPYPR GYYKCSSLKS CMARKLVERS PAKPGVLVVT  240
YIADHCHAVP TMLNALAGTT RNRPAAESPD DGDHHHHQEH HDHETSDGAP AASADNKLDD  300
DGADAASTMT VEENDAWLVD HMALEDDVVD GDCPFDDFLW PFDDDLDQFL DVDGGGVLGR  360
RLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-16171251280Disease resistance protein RRS1
5w3x_D2e-16171251280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G247700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114169e-84AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706019e-84AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440335.20.0WRKY transcription factor 22
TrEMBLA0A1B6PAC40.0A0A1B6PAC4_SORBI; Uncharacterized protein
STRINGSb09g029850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1998922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-32WRKY family protein