PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G247300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 263aa    MW: 28367.5 Da    PI: 8.2022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G247300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.6e-33114171259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s++prsYYrCt+a+C vkk+vers++dp++v++tYeg+H+h+
  Sobic.009G247300.2.p 114 EDGYRWRKYGQKAVKNSTYPRSYYRCTTARCGVKKRVERSQQDPSTVITTYEGQHTHP 171
                           8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-3598173IPR003657WRKY domain
SuperFamilySSF1182904.05E-29105173IPR003657WRKY domain
PROSITE profilePS5081130.779108173IPR003657WRKY domain
SMARTSM007741.3E-37113172IPR003657WRKY domain
PfamPF031061.8E-26114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVVQLSDSRR DADADGQMAG AAAVTPANSS VLSSSSCEAG ADANDDDEEP SRRRCGKKGR  60
IEGEEEQEGE GEADDDAADR NCKSSKENKK RRGEKKAREP RVAFMTKSEV DHLEDGYRWR  120
KYGQKAVKNS TYPRSYYRCT TARCGVKKRV ERSQQDPSTV ITTYEGQHTH PSPIDLLRRG  180
GGAAALMRSA AVAGGFRRPD DLLKIDDYAG TPIGFLPLLP PGGIGAGGGG RLLHHRARSS  240
QLAAVDAYGG MLELDFIPSI PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27104173877Probable WRKY transcription factor 4
2lex_A3e-27104173877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.104945e-70embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G247300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-104KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303466.10.0WRKY transcription factor WRKY24
TrEMBLA0A1Z5R3Z80.0A0A1Z5R3Z8_SORBI; Uncharacterized protein
STRINGSb09g029810.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-46WRKY DNA-binding protein 28