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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.009G243600.1.p |
| Common Name | Sb09g029510, SORBIDRAFT_09g029510 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GATA |
| Protein Properties |
Length: 297aa MW: 30315.8 Da PI: 7.6997 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G243600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 63.7 | 2.1e-20 | 165 | 199 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
Sobic.009G243600.1.p 165 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 199
********************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MLRHCSSSHH QHRHHQSTAA TASNTMAAAS STTFSLFFPL HTNKAEFAPV AMAADGFDDD 60
SHSSVTTSPS SPSSSSTGSV DCTLSLGTPS SRRAAETTKQ RPACLASCGS VSWDVAATID 120
PSYCCCCCCQ GGSRPAAAAA AAAMNKTAVP CAGHGQDPML VDRRCANCGT SSTPLWRNGP 180
RGPKSLCNAC GIRFKKEERR AAATATAAMD QGGCGYFAQR AQYGAAAAAA AGSAAPVPYG 240
GCEAPAFPCG GGGDVVDAEA VPPQFLAWHL DVVAPAAQAA AFAAVWPERT TRFQYN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
