PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.009G206800.1.p | ||||||||
Common Name | Sb09g026350, SORBIDRAFT_09g026350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 25326.7 Da PI: 9.2748 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.3 | 6.7e-33 | 154 | 212 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C vkk+v+r a+d+++v++tYeg Hnh+ Sobic.009G206800.1.p 154 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCDVKKQVQRLAKDTSIVVTTYEGVHNHP 212 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-33 | 140 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 146 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.483 | 149 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-38 | 154 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 155 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MENSPLHGVI RQPNTPPLAT GTCLAPLPPA VAAPQPPEQH ACSSDATTTS LVPGAATMMS 60 CPPAAVDWAS LLLPRAPGTL HVGTTPPPVA SEVESGGSSA VTVAGSSASA TAAGEGDNNY 120 KAGKAGKAGG GGRGKKKASR PRFAFQTRSD NDVLDDGYRW RKYGQKAVKN SAFPRSYYRC 180 THHTCDVKKQ VQRLAKDTSI VVTTYEGVHN HPCEKLMEAL SPILKQLQLL SQLQSCTNQL 240 L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-24 | 144 | 211 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-24 | 144 | 211 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.009G206800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958074 | 1e-180 | EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441423.1 | 1e-179 | probable WRKY transcription factor 56 | ||||
TrEMBL | C5Z1G4 | 1e-177 | C5Z1G4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g026350.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64000.1 | 2e-46 | WRKY DNA-binding protein 56 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.009G206800.1.p |
Entrez Gene | 8068964 |