PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G196900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 677aa    MW: 73463.6 Da    PI: 6.6671
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G196900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24132233199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F
  Sobic.009G196900.1.p 132 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLF 218
                           99****************************9866664..459*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + s++el+++v+r+
  Sobic.009G196900.1.p 219 L--RGSDGELRLGVRRA 233
                           *..449999*****996 PP
2Auxin_resp942.4e-31258338182
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                           +a++++++s+F++++nPr ++seF+v++ k++k l+ ++s+G+Rfk+   +ed++er+  G+++g+s++dp+rWp+SkW+sL
  Sobic.009G196900.1.p 258 VASSLDNRSIFHICFNPRIGASEFIVPYCKFLKGLNYPFSIGTRFKVGCKNEDANERS-FGLISGISEVDPIRWPGSKWKSL 338
                           578899***************************************************9.8********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-43128245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-38129235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-21130232No hitNo description
PfamPF023629.2E-22132233IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042132234IPR003340B3 DNA binding domain
SMARTSM010194.7E-23132234IPR003340B3 DNA binding domain
PfamPF065071.2E-24259338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MGIDLNSVEE DEQAPAGAVC CGELWHACAG AGVALPRRGS AVVYLPQAHL AAGGDGGELP  60
ALAAAPRVPP HVVCRVVDVE LRADAATDEV YARLALVAED KMFGRNIHDG ETEEKDGEKE  120
DGDGEKLTSH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYEQLRPSQ ELIAKDLHGM  180
KWRFRHIYRG QPRRHLLTTG WSSFINKKKL VSGDAVLFLR GSDGELRLGV RRAVQLKNEA  240
LLEAVNCTDS KLLMLSAVAS SLDNRSIFHI CFNPRIGASE FIVPYCKFLK GLNYPFSIGT  300
RFKVGCKNED ANERSFGLIS GISEVDPIRW PGSKWKSLLV KWDGDTKYSH QNRVSPWDIE  360
RVGSSVSVTH CLSSCVSKRM KLCFPQGNLD APILDGNGRP DSVGTEGFHQ VLQGQELVRV  420
HGAACSHSSD TPRCQGSYGR RFSADVWNCK MNDGHLNTTG FAYQPLGFSE SVKFSEVLQG  480
QEMSQVAAPS FMRDAFSAGT QNGRVRSFDY VQRSAATQGY ALQQFNLPAT EVHSPSSVLM  540
FNQTMVPQPE LDGLTNREEA YGSGYSSIAI QREAEPWPST QQQRVRENGS EPLDTTEASA  600
PARIAKSGSV DRGVGGSSCK LFGFSLTEKI LGTEGVGGKE GNYEADRQTP RVLDLLGHGH  660
STPGALHALC AAPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-962136420357Auxin response factor 1
4ldy_B8e-962136420357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210740.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G196900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648530.0BT064853.1 Zea mays full-length cDNA clone ZM_BFb0215K23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302630.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A1B6P9I20.0A0A1B6P9I2_SORBI; Auxin response factor
STRINGSb09g025500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Representative plantOGRP1425444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-134ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]