PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G181900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YC | ||||||||
Protein Properties | Length: 241aa MW: 26948.5 Da PI: 8.4808 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.9 | 4.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl+++v + Sobic.009G181900.3.p 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLTEVVSK 86 5789*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.6E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.2E-19 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-16 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60 TVGSSHLKQC IQTYNVYDFL TEVVSKVPDI GPSDVIADDK LGKRRKAEED GSEEELKRTR 120 NETESYTSNG RGRGRGRGRG RRGRGAWREV VTTHEQFAEN QSSKLASLKV EVADEVSNAT 180 EAKEATTPCH PKPSCQLQQL APPQPLQDLD HLLQDLDHLF HGQRKEQNSR IFLALGDCLT 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 8e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 139 | RGRGRGRGRG |
2 | 130 | 140 | RGRGRGRGRGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15727 | 0.0 | callus| ovary| pollen |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G181900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967616 | 0.0 | EU967616.1 Zea mays clone 304857 dr1-associated corepressor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303438.1 | 1e-134 | dr1-associated corepressor homolog | ||||
TrEMBL | A0A1Z5R463 | 1e-177 | A0A1Z5R463_SORBI; Uncharacterized protein | ||||
STRING | Sb09g024220.1 | 1e-133 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 6e-54 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G181900.3.p |