PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G103800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27799.9 Da PI: 7.8285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g Sobic.009G103800.1.p 42 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 91 59****999.**********954...5**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-30 | 42 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-38 | 42 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 42 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-18 | 42 | 97 | No hit | No description |
PROSITE profile | PS51032 | 22.379 | 42 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-21 | 42 | 98 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEPNNNQPAA TAEEAAAGSG PGGEGGRKGK APKGGPENGK FRYRGVRQRS WGKWVAEIRE 60 PRKRSRKWLG TFATAEDAAR AYDRAALLLY GPRAHLNLTS PPPPTLAAPR SHPHSSATSS 120 SSAPPALRPL LPRPPLHHQL SSGACAPAPD FHHHHQQFQC HHLLPQAQPT PPLYYANTAT 180 ASTVTTTVPT RVAVPQEPAV APAVGSSTSL QEPQASTPEE APRETGWDYH GGEEEDYAAA 240 LLWDEPEPFF WFDVFLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 43 | 98 | 6 | 62 | ATERF1 |
3gcc_A | 1e-16 | 43 | 98 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G103800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY125490 | 0.0 | AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302559.1 | 0.0 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A1B6P7N1 | 0.0 | A0A1B6P7N1_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G093595_P01 | 1e-109 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G103800.1.p |