PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G086800.1.p
Common NameSb09g008000, SORBIDRAFT_09g008000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 403aa    MW: 44129.6 Da    PI: 6.6837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G086800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31.1e-51221531129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           l pGfrFhP+d e+v++yL kkv+++++ +  +i evd++k+ePwdLp+++k +ekewyfFsk+d+ky+tg r+nrat++gyWkatgkd
  Sobic.009G086800.1.p  22 LLPGFRFHPNDFEIVNDYLMKKVHNRDFIC--AIGEVDLNKTEPWDLPREAKMNEKEWYFFSKKDRKYPTGLRANRATEAGYWKATGKD 108
                           579************************777..7***************9999999********************************** PP

                   NAM  90 kevlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129
                           kev++ ++ +     +g+kktLvfy+grap+g+kt+Wvmheyrle
  Sobic.009G086800.1.p 109 KEVYKPSKGEgvvllIGMKKTLVFYEGRAPRGNKTNWVMHEYRLE 153
                           *****8444456788****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5615194IPR003441NAC domain
PROSITE profilePS5100554.39922194IPR003441NAC domain
PfamPF023651.1E-2624152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADQQQPQQE EMNIVRVGGL DLLPGFRFHP NDFEIVNDYL MKKVHNRDFI CAIGEVDLNK  60
TEPWDLPREA KMNEKEWYFF SKKDRKYPTG LRANRATEAG YWKATGKDKE VYKPSKGEGV  120
VLLIGMKKTL VFYEGRAPRG NKTNWVMHEY RLEGNSRVPS PTSASSSTTN ATIAIKGSAF  180
VSKDEWVICR VFHKTTGIRK TTIPAYQVAM PDAEIDQNQN NTLAIPVPMQ LQLPQSMPMP  240
MQCPILPDFS MDPVPPYYPN SNTGIGMPLV MPPMAGIGGT GGLQINGSLF NNPMVVPPSM  300
NFYHQMGMGS SAGQMGTGEP IGQMDMGALV GQMGIGPVAQ MDMGAASASG FNVAMSESRP  360
SSMVLQKDEQ ANAAEITSMM SVSGPGSATT TIEIDGIWKY KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-452020015171NO APICAL MERISTEM PROTEIN
1ut4_B1e-452020015171NO APICAL MERISTEM PROTEIN
1ut7_A1e-452020015171NO APICAL MERISTEM PROTEIN
1ut7_B1e-452020015171NO APICAL MERISTEM PROTEIN
3swm_A2e-452020018174NAC domain-containing protein 19
3swm_B2e-452020018174NAC domain-containing protein 19
3swm_C2e-452020018174NAC domain-containing protein 19
3swm_D2e-452020018174NAC domain-containing protein 19
3swp_A2e-452020018174NAC domain-containing protein 19
3swp_B2e-452020018174NAC domain-containing protein 19
3swp_C2e-452020018174NAC domain-containing protein 19
3swp_D2e-452020018174NAC domain-containing protein 19
4dul_A1e-452020015171NAC domain-containing protein 19
4dul_B1e-452020015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G086800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439487.10.0NAC domain-containing protein 100
SwissprotQ9FK445e-67NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC5YV730.0C5YV73_SORBI; Uncharacterized protein
STRINGSb09g008000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-69NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]