PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G086800.1.p

Common Name

Sb09g008000, SORBIDRAFT_09g008000

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 403aa MW: 44129.6 Da PI: 6.6837

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G086800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1.1e-51	22	153	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l pGfrFhP+d e+v++yL kkv+++++ + +i evd++k+ePwdLp+++k +ekewyfFsk+d+ky+tg r+nrat++gyWkatgkd Sobic.009G086800.1.p 22 LLPGFRFHPNDFEIVNDYLMKKVHNRDFIC--AIGEVDLNKTEPWDLPREAKMNEKEWYFFSKKDRKYPTGLRANRATEAGYWKATGKD 108 579**********************777..7***********9999999****************************** PP NAM 90 kevlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 kev++ ++ + +g+kktLvfy+grap+g+kt+Wvmheyrle Sobic.009G086800.1.p 109 KEVYKPSKGEgvvllIGMKKTLVFYEGRAPRGNKTNWVMHEYRLE 153 *8444456788**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-56	15	194	IPR003441	NAC domain
PROSITE profile	PS51005	54.399	22	194	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	24	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MADQQQPQQE EMNIVRVGGL DLLPGFRFHP NDFEIVNDYL MKKVHNRDFI CAIGEVDLNK 60 TEPWDLPREA KMNEKEWYFF SKKDRKYPTG LRANRATEAG YWKATGKDKE VYKPSKGEGV 120 VLLIGMKKTL VFYEGRAPRG NKTNWVMHEY RLEGNSRVPS PTSASSSTTN ATIAIKGSAF 180 VSKDEWVICR VFHKTTGIRK TTIPAYQVAM PDAEIDQNQN NTLAIPVPMQ LQLPQSMPMP 240 MQCPILPDFS MDPVPPYYPN SNTGIGMPLV MPPMAGIGGT GGLQINGSLF NNPMVVPPSM 300 NFYHQMGMGS SAGQMGTGEP IGQMDMGALV GQMGIGPVAQ MDMGAASASG FNVAMSESRP 360 SSMVLQKDEQ ANAAEITSMM SVSGPGSATT TIEIDGIWKY KY*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MADQQQPQQE EMNIVRVGGL DLLPGFRFHP NDFEIVNDYL MKKVHNRDFI CAIGEVDLNK  60
TEPWDLPREA KMNEKEWYFF SKKDRKYPTG LRANRATEAG YWKATGKDKE VYKPSKGEGV  120
VLLIGMKKTL VFYEGRAPRG NKTNWVMHEY RLEGNSRVPS PTSASSSTTN ATIAIKGSAF  180
VSKDEWVICR VFHKTTGIRK TTIPAYQVAM PDAEIDQNQN NTLAIPVPMQ LQLPQSMPMP  240
MQCPILPDFS MDPVPPYYPN SNTGIGMPLV MPPMAGIGGT GGLQINGSLF NNPMVVPPSM  300
NFYHQMGMGS SAGQMGTGEP IGQMDMGALV GQMGIGPVAQ MDMGAASASG FNVAMSESRP  360
SSMVLQKDEQ ANAAEITSMM SVSGPGSATT TIEIDGIWKY KY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	20	200	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	20	200	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	20	200	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	20	200	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	20	200	18	174	NAC domain-containing protein 19
3swm_B	2e-45	20	200	18	174	NAC domain-containing protein 19
3swm_C	2e-45	20	200	18	174	NAC domain-containing protein 19
3swm_D	2e-45	20	200	18	174	NAC domain-containing protein 19
3swp_A	2e-45	20	200	18	174	NAC domain-containing protein 19
3swp_B	2e-45	20	200	18	174	NAC domain-containing protein 19
3swp_C	2e-45	20	200	18	174	NAC domain-containing protein 19
3swp_D	2e-45	20	200	18	174	NAC domain-containing protein 19
4dul_A	1e-45	20	200	15	171	NAC domain-containing protein 19
4dul_B	1e-45	20	200	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G086800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439487.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FK44	5e-67	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	C5YV73	0.0	C5YV73_SORBI; Uncharacterized protein
STRING	Sb09g008000.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-69	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Sobic.009G086800.1.p
Entrez Gene	8066642

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]