PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G084600.1.p
Common NameSb09g007870, SORBIDRAFT_09g007870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 237aa    MW: 24694.4 Da    PI: 5.3475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000286587123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C  C++ F++   L  H++ H
  Sobic.009G084600.1.p 65 YECVFCKRGFTTAQALGGHMNIH 87
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.12E-66391No hitNo description
PROSITE profilePS5015710.996592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESGSNMESK AASAGYEAMT SPMLEPVAAA AGGATAREDD EVAPPAPGSG EAPPLAPAAS  60
PKPYYECVFC KRGFTTAQAL GGHMNIHRRD RAKPTRDSPT SSGITTVSRN VECYNKYRHL  120
LAPSSYPPAV QPIPIPIGAG SSFGMYYTSS VAAAGARLDA EGGNPNSVSP RELSLFDEAS  180
RDQDLHLGLG RLQGHIVVVG EGSGAAAEGS SERQESGEPE RELDLELRLG RCPSRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454775e-32AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149615e-32AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439480.11e-170transcriptional regulator SUPERMAN
TrEMBLC5YV621e-169C5YV62_SORBI; Uncharacterized protein
STRINGSb09g007870.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Representative plantOGRP1198045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-14C2H2 family protein