PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G072100.1.p
Common NameSb09g006050, SORBIDRAFT_09g006050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 400aa    MW: 42664.6 Da    PI: 6.6142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G072100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08116137426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C++f++ G Ck+Gd C +aHg
  Sobic.009G072100.1.p 116 AACPDFRK-GGCKRGDACEYAHG 137
                           78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0869101IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122113139IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6116137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4118139IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.751147171IPR000571Zinc finger, CCCH-type
SMARTSM0035627147170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMMMGEGAYA PPWQQSPAAS MDADEAASPY ALLAALQHYL PSNEVSAAAA PYDEDDEEAA  60
LAAGVDAYAC DEFRMYEFKV RRCSRGRSHD WTDCPYAHPG EKARRRDPRR YHYSGAACPD  120
FRKGGCKRGD ACEYAHGVFE CWLHPSRYRT QPCKDGTGCR RRVCFFAHTP DQLRVLPQQQ  180
QSSPRGASAA SPLAESYDGS PLRRQAFESY LTKSGMIMSS SPTSTLVSPP RSPPSESSPP  240
MSPDALRRGS WPGVGSPVNE VLASLRQLRL GAGGGSPRSA PSSGSSFLAG GSGGGYPFGS  300
PKSPAAGLYS LPSTPTCRPS PVTVTTASGA TIMTVDRLNL GLIGDEEEPV MERVESGRAL  360
REKVFERLSK EATVPNDTAA SANVEGAAPD VGWVSDLIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.178120.0callus| embryo| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G072100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9692390.0EU969239.1 Zea mays clone 327364 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440755.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-172C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLC5YUD40.0C5YUD4_SORBI; Uncharacterized protein
STRINGSb09g006050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-86C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]