PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G067700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 362aa    MW: 39898.2 Da    PI: 6.553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G067700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167293122
                          EEETTTTEEESSHHHHHHHHHH CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                          ++C+ CgksF+   +L+ H  +
  Sobic.009G067700.1.p 72 HTCNECGKSFKEMISLHGHKGV 93
                          79*************9999755 PP
2zf-C2H216.81.9e-05204226123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k+Fs++  L  H++ H
  Sobic.009G067700.1.p 204 FVCTTCKKTFSSSNALGGHMSIH 226
                           89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00747196IPR007087Zinc finger, C2H2
SMARTSM003550.147294IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.51E-77294No hitNo description
PROSITE profilePS5015712.037299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-57297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576674.51E-7199226No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5202229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-6204226IPR007087Zinc finger, C2H2
SMARTSM003550.0098204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576676.77E-5246276No hitNo description
PfamPF139123.7E-8247270IPR007087Zinc finger, C2H2
SMARTSM003551.6247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMSAGKQNAR ELVDNFEANC SPNAIPSLEQ SEISAAEATR INKISLFDNA KVASPDEIAN  60
TAAAVDKPIM VHTCNECGKS FKEMISLHGH KGVHRREEKK HMRMMMAEQQ PTVSSQKPRK  120
TKKDEMKTTL IAAQTLEMLL MEFKWHQKDN LSASMTCSNK HISADEETDE MREIAEFLET  180
RAQSFCEDST MHVSSSSASI AKCFVCTTCK KTFSSSNALG GHMSIHSNKR TKYSLLEDGG  240
AGSTWEHVCD KCNEKFPTGQ ILGGHKRKHW WEEHYKAKAL LEAQNVKPPL TILPHHELER  300
TGLVVVPTDE NIQPAGTTGL VVAAHTVPLA CDDVQKPQQA MTQGNEIELP VPSGVSDEDL  360
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G067700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6P7890.0A0A1B6P789_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2236947
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-11salt tolerance zinc finger