PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 345aa    MW: 39463.4 Da    PI: 6.04
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.4e-1397142247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++W+++E++ ++++ + +G g+Wk I+r++  +Rt+ q+ s+ qky
  Sobic.009G039500.1.p  97 NAWSQDEHKNFLRGLEAYGRGSWKNISRYFVPTRTPVQICSHAQKY 142
                           58*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.23190147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1092145IPR009057Homeodomain-like
SuperFamilySSF466893.82E-1493146IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-1394146IPR006447Myb domain, plants
SMARTSM007171.2E-995145IPR001005SANT/Myb domain
PfamPF002491.0E-1097142IPR001005SANT/Myb domain
CDDcd001671.91E-898143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPNFNGVWS ASEIDMVKSF ITSDNINNTY THDANKRQNE IVDELQASFI GKEKHQDTNM  60
ENMDMLHGYI LDDVEVTKMT EEPPHKLNTI PNKKRQNAWS QDEHKNFLRG LEAYGRGSWK  120
NISRYFVPTR TPVQICSHAQ KYFHRKECTR KQRFSINDVS LYDTKPWVQK NSSSLEALAL  180
DHNAHNTNYY GFEGQHTTLN KVAHASQVSS RQVATWTRGQ HIIGSSSIDP TMVQSDSLGW  240
EAFTFTSGAN NMNYDQYDFD GQHGDMNNLV YADQVSNNQV ATWTRGQETT IPSVAPMTVQ  300
NSLPSWEVLS FTNSDYNTNY CDFDEQQVAM NNIARGQPWW STTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440567.11e-169uncharacterized protein LOC8068215
TrEMBLA0A1B6P6E40.0A0A1B6P6E4_SORBI; Uncharacterized protein
STRINGSb09g003340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-19MYB_related family protein