PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G028500.4.p
Common NameSb09g002390, SORBIDRAFT_09g002390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 612aa    MW: 64097.6 Da    PI: 8.3434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G028500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09273294526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f+++G C+ Gd+C +aHg
  Sobic.009G028500.4.p 273 PCPEFRKGGACRKGDNCEYAHG 294
                           8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.38E-673150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.01874144IPR020683Ankyrin repeat-containing domain
SMARTSM0024873074104IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.5E-875172IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.446109144IPR002110Ankyrin repeat
SMARTSM002480.34109141IPR002110Ankyrin repeat
PROSITE profilePS5010313.441268296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5268298IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6268295IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6273294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5273296IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643304328IPR000571Zinc finger, CCCH-type
SMARTSM0035689304327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MCSGPRKPST PPLPTATAKD SSAMTAAAAV LLELAAADDV VAFRRAAEDD KAPALDAVAH  60
WYGPSAGAGR LRLEARTPAM VAALYGSASV LAYVLSSAPA EAARASPTDG ATPLHLAAAG  120
GAAGAVAATH LLLAAGASAD ALAFSGLRAG DLLPRANAAA DRDRALRVLL KSPAASPSSS  180
PKKSASPPPP LAAAAAAAAA ALPAEPRKEY PPDLTLPDLK SGLFSTDEFR MYSFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRRYSYS CVPCPEFRKG GACRKGDNCE YAHGVFECWL  300
HPAQYRTRLC KDEVGCARRI CFFAHKPEEL RAVNPSAVSV GMQPTVSSPR SSPPNGLDMG  360
GGMLNPAWPS SPASRLKTAL AGRELDFDLE LLALDQYQQK LFDKVSSPRA SWGSAGGIGS  420
PLPAASPART VPDYTDLLGS VDPAMLSQLH ALSLKQAGDM PAYSSMADTQ LHMPTSPMVG  480
GPNTAFGLDH SAMAKAIMSS RASAFAKRSQ SFIDRGGRAP ATRSLMSQQS TTGAPSMLSD  540
WGSPDGKLDW GVQGDELHKF RKSASFAFRG QSPAPVPTPA EPDVSWVNSL VKDGHAGDIF  600
AQWPEQEQMV A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.109840.0callus| leaf| panicle| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G028500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969790.0FP096979.1 Phyllostachys edulis cDNA clone: bphyem206f17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439217.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A1Z5R1M90.0A0A1Z5R1M9_SORBI; Uncharacterized protein
STRINGSb09g002390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-109C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]