PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G023900.1.p
Common NameSb09g002010, SORBIDRAFT_09g002010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 273aa    MW: 28848.6 Da    PI: 8.1454
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G023900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-202281357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Sobic.009G023900.1.p 22 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 81
                          8*****************99*************************************996 PP
2Wus_type_Homeobox118.23.7e-382182364
     Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                          +tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Sobic.009G023900.1.p 21 STRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 82
                          79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.6E-41986IPR001356Homeobox domain
CDDcd000863.55E-52282No hitNo description
PfamPF000466.0E-182281IPR001356Homeobox domain
SuperFamilySSF466891.8E-102282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-72381IPR009057Homeodomain-like
PROSITE profilePS500719.7662782IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPSQQQQQQG QRGEPQVVAG STRWCPTPEQ LMILEEMYRG GLRTPNASQI QQITAHLACY  60
GRIEGKNVFY WFQNHKARDR QKLRRRLCMS HHLLSCAQYY AAAQAHHGHG HGGFLAAAPP  120
PVVAPYMLSP STSPTPAAAA AAAAAYGYYY PTTAAAAFAA PPAPTASRCA GNATPPSPTT  180
QLFHYQHQGG GGGGLVPAAE ALGRPEYSSL GKLDNFGVAA LDDVVVSSTS TAVDMMAPPG  240
FEVAPPPAAF CRPLKTLDLF PGGLKEEQHD VA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G023900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302751.10.0putative WUSCHEL-related homeobox 2
TrEMBLA0A1Z5R1J10.0A0A1Z5R1J1_SORBI; Uncharacterized protein
STRINGSb09g002010.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-40WOX family protein