PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G006900.1.p
Common NameSb09g000820, SORBIDRAFT_09g000820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 378aa    MW: 42339.1 Da    PI: 8.0909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G006900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002891113323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           C+  +Cgk+F + s L++H  +H
  Sobic.009G006900.1.p  91 CSydNCGKTFVDVSALRKHAHVH 113
                           88889**************9887 PP
2zf-C2H220.41.4e-06118142123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y C+  +Cgk F ++s LkrH  tH
  Sobic.009G006900.1.p 118 YICNepNCGKKFVDSSKLKRHYLTH 142
                           899999****************999 PP
3zf-C2H2201.9e-06148172123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++Cp   Cgk Fs   nL++H++tH
  Sobic.009G006900.1.p 148 FVCPhpGCGKAFSLDFNLRSHLKTH 172
                           89**********************9 PP
4zf-C2H212.90.00034178202123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           + Cp   Cgk+F++   L  H ++H
  Sobic.009G006900.1.p 178 HICPfpACGKRFTSDFKLAAHVKSH 202
                           5799999****************99 PP
5zf-C2H214.97.7e-05241266123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           y+Cp   C+k + + + L+ H++t H
  Sobic.009G006900.1.p 241 YVCPyeGCDKAYIHGYKLNLHLKTqH 266
                           99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1284112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.84389118IPR007087Zinc finger, C2H2
SMARTSM003550.01189113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.64E-992142No hitNo description
Gene3DG3DSA:3.30.160.601.0E-13113138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.295118147IPR007087Zinc finger, C2H2
SMARTSM003550.0013118142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-12129181No hitNo description
Gene3DG3DSA:3.30.160.606.9E-19139173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.926148177IPR007087Zinc finger, C2H2
SMARTSM003558.3E-4148172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-8176202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.723178202IPR007087Zinc finger, C2H2
SMARTSM003550.017178202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-6234266No hitNo description
Gene3DG3DSA:3.30.160.606.2E-9237266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538241274IPR007087Zinc finger, C2H2
SMARTSM003550.011241266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEYPAAAAGS GGHKYYYPPQ HSQPQALRRP PRPAARWVKQ WIPQDLASSG GKCSLFKWVR  60
EDRYRNSKEN PRVLDVEAPK PEPTTEILFL CSYDNCGKTF VDVSALRKHA HVHNEKQYIC  120
NEPNCGKKFV DSSKLKRHYL THTGQKDFVC PHPGCGKAFS LDFNLRSHLK THALENYHIC  180
PFPACGKRFT SDFKLAAHVK SHEKIGTPIA VQHAPAPAAE KPRVAPKPST PATTSYTDRP  240
YVCPYEGCDK AYIHGYKLNL HLKTQHPEHG QEENGKVGAS AGHHAANEQT YQYNYAEVGE  300
IAPNPKRSKH KVHSSKAYNA KVSRAMPSDI GGVRNQWPGK ATYQDDSEET EEDGGHNIED  360
GWRYGNNDDD EETPDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-32912048119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.8640.0callus| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G006900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0371600.0BT037160.1 Zea mays full-length cDNA clone ZM_BFb0157B04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439119.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-100YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLC5YY370.0C5YY37_SORBI; Uncharacterized protein
STRINGSb09g000820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]